Variant report

Variant	rs145403972
Chromosome Location	chr10:45422898-45422899
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:45422663-45422968	MCF10A-Er-Src	breast:	n/a	n/a
2	ESR1	chr10:45422693-45423094	ECC-1	luminal epithelium:	n/a	n/a
3	STAT3	chr10:45422646-45422979	MCF10A-Er-Src	breast:	n/a	n/a
4	ESR1	chr10:45422696-45423088	ECC-1	luminal epithelium:	n/a	n/a
5	FOS	chr10:45422708-45422927	MCF10A-Er-Src	breast:	n/a	n/a
6	EP300	chr10:45422556-45423042	HepG2	liver:	n/a	n/a
7	CEBPB	chr10:45422640-45422985	IMR90	lung:	n/a	chr10:45422822-45422833
8	STAT3	chr10:45422662-45422973	MCF10A-Er-Src	breast:	n/a	n/a
9	HNF4A	chr10:45422769-45423011	HepG2	liver:	n/a	n/a
10	ESR1	chr10:45422663-45423088	ECC-1	luminal epithelium:	n/a	n/a
11	STAT3	chr10:45422656-45422941	MCF10A-Er-Src	breast:	n/a	n/a
12	ESR1	chr10:45422717-45423103	ECC-1	luminal epithelium:	n/a	n/a
13	STAT3	chr10:45422679-45422968	MCF10A-Er-Src	breast:	n/a	n/a
14	FOS	chr10:45422734-45422923	MCF10A-Er-Src	breast:	n/a	n/a
15	CEBPB	chr10:45422631-45423079	HepG2	liver:	n/a	chr10:45422822-45422833
16	RFX5	chr10:45422754-45423074	HepG2	liver:	n/a	n/a
17	HNF4G	chr10:45422657-45423015	HepG2	liver:	n/a	n/a
18	FOS	chr10:45422686-45422974	MCF10A-Er-Src	breast:	n/a	n/a
19	MYC	chr10:45422681-45422968	MCF10A-Er-Src	breast:	n/a	n/a
20	E2F4	chr10:45422732-45423031	MCF10A-Er-Src	breast:	n/a	n/a
21	CEBPB	chr10:45422676-45422951	K562	blood:	n/a	chr10:45422822-45422833
22	CEBPB	chr10:45422701-45422923	HepG2	liver:	n/a	chr10:45422822-45422833
23	CEBPB	chr10:45422643-45423015	HepG2	liver:	n/a	chr10:45422822-45422833
24	FOS	chr10:45422707-45422955	MCF10A-Er-Src	breast:	n/a	n/a
25	HNF4A	chr10:45422641-45422975	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TMEM72	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3374788	chr10:45419346-45423644	Genic enhancers Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv818757	chr10:45420076-45431321	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3513804	chr10:45422810-45425594	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45410200-45430400	Weak transcription	Gastric	stomach
2	chr10:45413400-45428200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
4	chr10:45418800-45424800	Weak transcription	Colonic Mucosa	Colon
5	chr10:45420400-45428000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:45420400-45428200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:45421000-45423200	Weak transcription	Lung	lung
8	chr10:45421000-45427800	Weak transcription	Right Ventricle	heart
9	chr10:45421600-45428000	Weak transcription	Fetal Heart	heart
10	chr10:45421800-45425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:45422200-45423000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr10:45422200-45423200	Flanking Active TSS	HepG2	liver
13	chr10:45422200-45423400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr10:45422200-45423600	Enhancers	Fetal Intestine Large	intestine
15	chr10:45422200-45423600	Enhancers	HSMMtube	muscle
16	chr10:45422400-45423200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:45422400-45423200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:45422400-45423200	Enhancers	Esophagus	oesophagus
19	chr10:45422400-45423400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:45422400-45423400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:45422400-45423400	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:45422400-45423400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:45422400-45423400	Enhancers	Pancreas	Pancrea
24	chr10:45422400-45423600	Enhancers	Fetal Intestine Small	intestine
25	chr10:45422400-45423600	Enhancers	Fetal Muscle Leg	muscle
26	chr10:45422600-45423200	Enhancers	Adipose Nuclei	Adipose
27	chr10:45422600-45427800	Weak transcription	Spleen	Spleen
28	chr10:45422800-45423000	Enhancers	Osteobl	bone
29	chr10:45422800-45423200	Enhancers	Fetal Thymus	thymus
30	chr10:45422800-45423200	Enhancers	Ovary	ovary
31	chr10:45422800-45423400	Enhancers	Liver	Liver
32	chr10:45422800-45423400	Enhancers	Fetal Muscle Trunk	muscle

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