The 2.0 version of rSNPBase
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Variant report
Variant
rs145434449
Chromosome Location
chr12:119087998-119087999
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:4)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
MAX
chr12:119087963-119088208
K562
blood:
n/a
n/a
2
CEBPB
chr12:119087973-119088334
K562
blood:
n/a
n/a
3
MYC
chr12:119087954-119088551
K562
blood:
n/a
n/a
4
EP300
chr12:119087947-119088174
K562
blood:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
ENSG00000255714
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv930978
chr12:118866332-119450600
Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
15 gene(s)
inside rSNPs
diseases
2
nsv1039515
chr12:119085196-119218918
ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
5 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links