Variant report

Variant	rs1454465
Chromosome Location	chr6:81289390-81289391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10447325	0.81[EUR][1000 genomes]
rs10447326	0.81[EUR][1000 genomes]
rs10943720	0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs1454466	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2168103	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2603458	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2653484	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28360539	0.80[EUR][1000 genomes]
rs4315973	0.81[EUR][1000 genomes]
rs4527663	0.80[EUR][1000 genomes]
rs722715	0.83[EUR][1000 genomes]
rs9449074	0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:68 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv998220	chr6:81258085-81298829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv522523	chr6:81262988-81298688	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2757182	chr6:81265495-81304211	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2759448	chr6:81265495-81304211	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2763979	chr6:81271296-81295103	Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1022350	chr6:81275753-81289522	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1032533	chr6:81275753-81294402	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1016976	chr6:81276080-81289522	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv604055	chr6:81276726-81293161	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv970721	chr6:81277532-81291968	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv7933	chr6:81277557-81293811	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv1031949	chr6:81277973-81289522	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv1016156	chr6:81277973-81294402	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
18	esv3584851	chr6:81277985-81289534	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv3472883	chr6:81283593-81293685	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3472882	chr6:81283631-81293646	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
21	esv3472879	chr6:81283635-81293657	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
22	esv3472881	chr6:81283650-81293605	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
23	esv3472880	chr6:81283705-81293582	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
24	esv3472884	chr6:81283719-81293579	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv996366	chr6:81283740-81292720	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv14530	chr6:81283740-81293537	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
27	nsv1028708	chr6:81284177-81294329	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
28	nsv1022476	chr6:81284177-81294402	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	nsv1032415	chr6:81284177-81295091	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
30	esv999599	chr6:81284189-81289534	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
31	esv2761045	chr6:81284189-81289534	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	esv3584852	chr6:81284189-81289534	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
33	nsv1034879	chr6:81284231-81294402	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
34	nsv604059	chr6:81284507-81289491	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
35	nsv604060	chr6:81284507-81291545	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
36	nsv604061	chr6:81284507-81291935	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
37	nsv604062	chr6:81284507-81292639	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
38	esv997292	chr6:81284507-81293082	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
39	nsv604063	chr6:81284507-81293082	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
40	nsv604064	chr6:81284507-81293161	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
41	nsv518724	chr6:81284507-81298688	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
42	esv1005679	chr6:81284792-81293281	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
43	nsv823759	chr6:81284792-81293496	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
44	nsv604066	chr6:81284876-81289390	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
45	nsv604067	chr6:81284876-81292639	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
46	nsv604068	chr6:81284876-81293082	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
47	nsv604069	chr6:81284876-81293161	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
48	nsv442993	chr6:81284958-81289534	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
49	nsv604070	chr6:81285228-81289390	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
50	nsv604071	chr6:81285228-81291545	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81288400-81289400	Enhancers	HSMM	muscle

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