Variant report

Variant	rs145467894
Chromosome Location	chr4:56180631-56180632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3373418	chr4:56180321-56180639	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56178800-56180800	Enhancers	Brain Hippocampus Middle	brain
2	chr4:56178800-56184200	Weak transcription	HUVEC	blood vessel
3	chr4:56179000-56181000	Enhancers	Brain Anterior Caudate	brain
4	chr4:56180400-56180800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:56180400-56180800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:56180400-56180800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:56180400-56180800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:56180400-56180800	Enhancers	Fetal Intestine Small	intestine
9	chr4:56180400-56181000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:56180400-56181000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:56180400-56181000	Enhancers	Stomach Mucosa	stomach
12	chr4:56180600-56180800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr4:56180600-56180800	Enhancers	Brain Substantia Nigra	brain
14	chr4:56180600-56181000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:56180600-56181000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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