Variant report

Variant	rs145479659
Chromosome Location	chr9:92859271-92859272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:91924753..91927067-chr9:92857901..92860576,2	MCF-7	breast:
2	chr9:92843844..92846787-chr9:92857417..92859315,2	MCF-7	breast:
3	chr9:92221881..92224569-chr9:92856789..92859369,3	MCF-7	breast:
4	chr9:92857591..92859341-chr9:92860040..92862686,2	MCF-7	breast:
5	chr9:92219124..92221595-chr9:92854778..92859945,4	MCF-7	breast:
6	chr9:92219255..92222737-chr9:92856647..92859942,4	MCF-7	breast:
7	chr9:92207554..92215968-chr9:92858794..92866301,17	MCF-7	breast:
8	chr9:92850629..92852906-chr9:92857887..92860130,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3380801	chr9:92859132-92863030	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92848800-92862200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:92855600-92864400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:92857000-92860400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr9:92857000-92861600	Enhancers	Fetal Brain Female	brain
5	chr9:92857000-92862400	Enhancers	Fetal Brain Male	brain
6	chr9:92857800-92859800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr9:92857800-92862800	Enhancers	Brain Germinal Matrix	brain
8	chr9:92857800-92862800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:92858000-92859800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:92858000-92860400	Enhancers	Left Ventricle	heart
11	chr9:92858000-92860800	Enhancers	Right Ventricle	heart
12	chr9:92858000-92861200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr9:92858400-92859600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr9:92858400-92861000	Weak transcription	Fetal Lung	lung
15	chr9:92858400-92861600	Weak transcription	Pancreas	Pancrea
16	chr9:92858600-92859600	Weak transcription	Psoas Muscle	Psoas
17	chr9:92858600-92870200	Weak transcription	Right Atrium	heart
18	chr9:92858800-92864400	Weak transcription	Fetal Intestine Large	intestine
19	chr9:92859000-92861200	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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