Variant report

Variant	rs145481924
Chromosome Location	chr2:74010305-74010306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr2:74010094-74010934	HepG2	liver:	n/a	chr2:74010778-74010789

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:74010290-74010340	MCF-7	breast:	n/a
2	chr2:74010290-74010340	NH-A	brain:	n/a
3	chr2:74010290-74010340	LNCaP	prostate:	n/a
4	chr2:74010290-74010340	GM12891	blood:	n/a
5	chr2:74010290-74010340	NT2-D1	testis:	n/a
6	chr2:74010290-74010340	PFSK-1	brain:	n/a
7	chr2:74010290-74010340	ECC-1	luminal epithelium:	n/a
8	chr2:74010290-74010340	HCT-116	colon:	n/a
9	chr2:74010290-74010340	BJ	skin:	n/a
10	chr2:74010290-74010340	HUVEC	blood vessel:	n/a
11	chr2:74010290-74010340	HCPEpiC	choroid plexus:	n/a
12	chr2:74010290-74010340	AG10803	skin:	n/a
13	chr2:74010290-74010340	ovcar-3	ovarian:	n/a
14	chr2:74010290-74010340	PANC-1	pancreas:	n/a
15	chr2:74010290-74010340	AG04450	lung:	fetal
16	chr2:74010290-74010340	HEEpiC	esophagus:	n/a
17	chr2:74010290-74010340	HL-60	blood:	n/a
18	chr2:74010290-74010340	HRE	kidney:	n/a
19	chr2:74010290-74010340	AG04449	skin:	fetal
20	chr2:74010290-74010340	Hela-S3	cervix:	n/a
21	chr2:74010290-74010340	K562	blood:	n/a
22	chr2:74010290-74010340	Caco-2	colon:	n/a
23	chr2:74010290-74010340	AoSMC	blood vessel:	n/a
24	chr2:74010290-74010340	GM06990	blood:	n/a
25	chr2:74010290-74010340	HepG2	liver:	n/a
26	chr2:74010290-74010340	SK-N-SH	brain:	n/a
27	chr2:74010290-74010340	NHBE	bronchial:	n/a
28	chr2:74010290-74010340	HCM	heart:	n/a
29	chr2:74010290-74010340	HRPEpiC	eye:	n/a
30	chr2:74010290-74010340	U87	brain:	n/a
31	chr2:74010290-74010340	HAEpiC	amniotic membrane:	n/a
32	chr2:74010290-74010340	BE2_C	brain:	n/a
33	chr2:74010290-74010340	RPTEC	kidney:	n/a
34	chr2:74010290-74010340	HCF	heart:	n/a
35	chr2:74010290-74010340	HIPEpiC	eye:	n/a
36	chr2:74010290-74010340	SK-N-MC	brain:	n/a
37	chr2:74010290-74010340	HRCEpiC	kidney:	n/a
38	chr2:74010290-74010340	MCF10A-Er-Src	breast:	n/a
39	chr2:74010290-74010340	GM12878	blood:	n/a
40	chr2:74010290-74010340	SK-N-SH_RA	brain:	n/a
41	chr2:74010290-74010340	HNPCEpiC	eye:	n/a
42	chr2:74010290-74010340	SAEC	small airway:	n/a
43	chr2:74010290-74010340	HMEC	breast:	n/a
44	chr2:74010290-74010340	Hepatocyte	liver:	n/a
45	chr2:74010290-74010340	AG09309	skin:	n/a
46	chr2:74010290-74010340	AG09319	gingival:	n/a
47	chr2:74010290-74010340	Jurkat	blood:	n/a
48	chr2:74010290-74010340	NHDF-neo	bronchial:	n/a
49	chr2:74010290-74010340	SKMC	muscle:	n/a
50	chr2:74010290-74010340	ProgFib	skin:	n/a

No data

Variant related genes	Relation type
C2orf78	TF binding region
DUSP11	TF binding region
DUSP11	CpG island
C2orf78	CpG island

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428051	chr2:73717032-74030067	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2757806	chr2:73717032-74078592	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv2759060	chr2:73717032-74078592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1013385	chr2:73822056-74041441	Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv834260	chr2:73906106-74076520	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv1000675	chr2:73919185-74038946	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv2780	chr2:73994168-74057248	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv1828210	chr2:74005068-74038451	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv1798760	chr2:74008555-74037432	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1796755	chr2:74008755-74037232	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv1829180	chr2:74008755-74040242	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv10024	chr2:74009680-74037260	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv12664	chr2:74009707-74039385	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv471530	chr2:74009713-74037182	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv963622	chr2:74009937-74011888	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
16	esv3371250	chr2:74010144-74014742	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
17	esv1794852	chr2:74010258-74036308	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv1831787	chr2:74010258-74036308	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74007400-74010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:74010000-74010400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:74010000-74010600	Enhancers	NHEK	skin
4	chr2:74010000-74010800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:74010000-74010800	Enhancers	Hela-S3	cervix
6	chr2:74010000-74011000	Enhancers	HMEC	breast
7	chr2:74010200-74010400	Enhancers	A549	lung
8	chr2:74010200-74010400	Flanking Bivalent TSS/Enh	HepG2	liver
9	chr2:74010200-74010600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr2:74010200-74010800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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