Variant report

Variant	rs145485872
Chromosome Location	chr20:16561431-16561432
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16550509..16554024-chr20:16560848..16563415,3	MCF-7	breast:
2	chr20:16554484..16557263-chr20:16559352..16563570,6	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762064	chr20:16558260-16568062	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv1058496	chr20:16558260-16575531	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv517032	chr20:16560990-16585314	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv585650	chr20:16561203-16585314	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16556400-16562400	Weak transcription	Left Ventricle	heart
2	chr20:16559400-16562000	Enhancers	Fetal Intestine Large	intestine
3	chr20:16559600-16561800	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr20:16559600-16561800	Enhancers	NHDF-Ad	bronchial
5	chr20:16559600-16562000	Enhancers	Duodenum Mucosa	Duodenum
6	chr20:16559600-16562000	Enhancers	Fetal Intestine Small	intestine
7	chr20:16559600-16562200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr20:16559800-16562000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr20:16559800-16562200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:16559800-16564600	Enhancers	Fetal Brain Male	brain
11	chr20:16559800-16567000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr20:16560000-16561600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr20:16560000-16561600	Enhancers	HMEC	breast
14	chr20:16560000-16561800	Enhancers	Osteobl	bone
15	chr20:16560000-16562000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr20:16560000-16562000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr20:16560000-16562000	Enhancers	Stomach Mucosa	stomach
18	chr20:16560000-16562200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr20:16560000-16562200	Enhancers	NHEK	skin
20	chr20:16560000-16562400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr20:16560000-16562600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr20:16560200-16561600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr20:16560200-16561600	Enhancers	Brain Germinal Matrix	brain
24	chr20:16560200-16561600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr20:16560200-16561600	Enhancers	NHLF	lung
26	chr20:16560200-16562200	Enhancers	Fetal Lung	lung
27	chr20:16560400-16561600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr20:16560400-16561600	Enhancers	Hela-S3	cervix
29	chr20:16560600-16561600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr20:16560800-16561600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr20:16560800-16561600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr20:16560800-16561600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr20:16560800-16561600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr20:16560800-16561600	Enhancers	Adipose Nuclei	Adipose
35	chr20:16560800-16561600	Enhancers	Fetal Brain Female	brain
36	chr20:16560800-16561600	Enhancers	Fetal Stomach	stomach
37	chr20:16560800-16561600	Enhancers	Lung	lung
38	chr20:16560800-16561600	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr20:16560800-16561800	Weak transcription	NH-A	brain
40	chr20:16560800-16562000	Enhancers	Colon Smooth Muscle	Colon
41	chr20:16560800-16562200	Enhancers	Stomach Smooth Muscle	stomach
42	chr20:16561000-16562400	Enhancers	Fetal Muscle Leg	muscle
43	chr20:16561200-16561600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr20:16561200-16561800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr20:16561200-16562400	Enhancers	Small Intestine	intestine
46	chr20:16561200-16563000	Weak transcription	Colonic Mucosa	Colon
47	chr20:16561400-16561800	Weak transcription	Psoas Muscle	Psoas

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