Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10054634	0.90[ASN][1000 genomes]
rs10940586	0.95[ASN][1000 genomes]
rs13162869	0.88[AMR][1000 genomes]
rs1349956	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs1378246	0.95[ASN][1000 genomes]
rs1387633	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1387634	0.95[ASN][1000 genomes]
rs1387636	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1387637	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1454904	0.88[AMR][1000 genomes]
rs1454916	0.91[ASN][1000 genomes]
rs1489788	0.95[ASN][1000 genomes]
rs1602155	0.95[ASN][1000 genomes]
rs1809660	0.95[ASN][1000 genomes]
rs1826098	0.95[ASN][1000 genomes]
rs1826099	0.94[ASN][1000 genomes]
rs1948276	0.95[ASN][1000 genomes]
rs1964507	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2015208	0.95[ASN][1000 genomes]
rs2124148	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2409025	0.88[AMR][1000 genomes]
rs2409026	0.88[AMR][1000 genomes]
rs4541617	0.88[AMR][1000 genomes]
rs4637506	0.88[AMR][1000 genomes]
rs4699919	0.95[ASN][1000 genomes]
rs6450456	0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6450457	0.95[ASN][1000 genomes]
rs6864437	0.95[ASN][1000 genomes]
rs72753316	0.83[AMR][1000 genomes]
rs7710627	0.95[ASN][1000 genomes]
rs9292149	0.90[ASN][1000 genomes]
rs9292150	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1792273	chr5:57214817-57320343	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1028794	chr5:57242812-57256096	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57247000-57251400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:57249600-57252200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:57249600-57253600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:57249800-57251000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:57250000-57251200	Weak transcription	K562	blood
6	chr5:57250400-57250800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

Quick Search: