Variant report

Variant	rs145493651
Chromosome Location	chr10:45420269-45420270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr10:45420068-45420457	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr10:45420049-45421121	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr10:45420160-45420310	HRPEpiC	eye:	n/a	chr10:45420266-45420282
4	CTCF	chr10:45420220-45420370	HepG2	liver:	n/a	chr10:45420266-45420282

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45419232..45422212-chr10:45424408..45426713,2	K562	blood:

Variant related genes	Relation type
ENSG00000234504	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3374788	chr10:45419346-45423644	Genic enhancers Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv818757	chr10:45420076-45431321	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45407800-45422800	Weak transcription	Ovary	ovary
2	chr10:45410200-45430400	Weak transcription	Gastric	stomach
3	chr10:45413200-45420400	Weak transcription	Fetal Kidney	kidney
4	chr10:45413400-45428200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
6	chr10:45417800-45422400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:45418800-45420800	Weak transcription	Spleen	Spleen
8	chr10:45418800-45424800	Weak transcription	Colonic Mucosa	Colon
9	chr10:45419400-45420800	Enhancers	Fetal Thymus	thymus
10	chr10:45419600-45420400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:45419600-45421000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:45419800-45420600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:45419800-45421000	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:45419800-45421200	Enhancers	Fetal Muscle Leg	muscle
15	chr10:45420000-45420400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr10:45420000-45421200	Enhancers	HSMMtube	muscle
17	chr10:45420200-45420400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:45420200-45420800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:45420200-45421000	Enhancers	Lung	lung
20	chr10:45420200-45421000	Enhancers	Pancreas	Pancrea
21	chr10:45420200-45422200	Enhancers	HepG2	liver

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