Variant report

Variant	rs145546635
Chromosome Location	chr6:5830297-5830298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv970075	chr6:5829270-5841514	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5825000-5832000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:5825400-5830600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:5825400-5830600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:5826600-5831600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:5827400-5835000	Enhancers	Fetal Thymus	thymus
6	chr6:5827600-5831600	Enhancers	Primary T cells from cord blood	blood
7	chr6:5828000-5831600	Weak transcription	Right Atrium	heart
8	chr6:5828200-5833800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:5828400-5831600	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:5828800-5831600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:5828800-5831600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:5828800-5831600	Weak transcription	Thymus	Thymus
13	chr6:5829000-5830400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:5829000-5830600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:5829000-5830800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:5829000-5831000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:5829000-5831600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:5829200-5831800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:5829200-5835000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:5829400-5831000	Weak transcription	Primary B cells from cord blood	blood
21	chr6:5829400-5831600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:5829600-5830600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:5829600-5830800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:5829600-5831200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:5829600-5831600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:5829600-5831600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:5830000-5830400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:5830000-5830400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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