Variant report

Variant	rs1455582
Chromosome Location	chr8:63812737-63812738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10095936	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10096177	0.80[ASN][1000 genomes]
rs10216382	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10957250	0.86[EUR][1000 genomes]
rs11779748	0.83[EUR][1000 genomes]
rs12679603	0.88[EUR][1000 genomes]
rs1350055	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1350056	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1824000	0.89[ASN][1000 genomes]
rs1947482	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947483	0.89[ASN][1000 genomes]
rs2168318	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28516791	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35448187	0.87[EUR][1000 genomes]
rs4237057	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4302833	0.80[EUR][1000 genomes]
rs4307337	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4446730	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4554461	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6472055	0.87[EUR][1000 genomes]
rs6984039	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7016805	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7018000	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7018025	0.88[EUR][1000 genomes]
rs7018340	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7826606	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7836848	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7842329	0.88[EUR][1000 genomes]
rs958694	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979262	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs979843	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63810200-63814600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links