Variant report

Variant	rs145577771
Chromosome Location	chr11:45942564-45942565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45867151..45870859-chr11:45942545..45946514,4	K562	blood:
2	chr11:45879680..45881437-chr11:45942342..45944046,2	MCF-7	breast:
3	chr11:45942020..45943576-chr11:46141975..46144467,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121671	Chromatin interaction
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1047462	chr11:45898630-45953696	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1794798	chr11:45903280-45953636	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv1805505	chr11:45912324-45956109	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1798496	chr11:45925495-45948304	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv3327833	chr11:45942401-45945249	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45940400-45943000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45940400-45943400	Weak transcription	Fetal Heart	heart
3	chr11:45940400-45943600	Weak transcription	Lung	lung
4	chr11:45940400-45943800	Weak transcription	Aorta	Aorta
5	chr11:45940600-45942600	Weak transcription	Fetal Lung	lung
6	chr11:45940600-45943000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:45940600-45943000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:45940600-45943000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:45940600-45943200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:45940600-45943200	Weak transcription	Ovary	ovary
11	chr11:45940600-45943400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:45940600-45943400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:45940600-45943400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:45940600-45943400	Weak transcription	HMEC	breast
15	chr11:45940600-45943600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:45940600-45943600	Enhancers	Brain Substantia Nigra	brain
17	chr11:45940600-45943600	Enhancers	K562	blood
18	chr11:45940600-45943600	Weak transcription	NHEK	skin
19	chr11:45940800-45942600	Weak transcription	Fetal Kidney	kidney
20	chr11:45940800-45943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:45941000-45943400	Enhancers	Primary B cells from cord blood	blood
22	chr11:45941000-45943400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr11:45941000-45943400	Weak transcription	Liver	Liver
24	chr11:45941000-45943600	Enhancers	Primary B cells from peripheral blood	blood
25	chr11:45941000-45943600	Weak transcription	Right Ventricle	heart
26	chr11:45941000-45943800	Weak transcription	Right Atrium	heart
27	chr11:45941200-45942800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:45941200-45942800	Weak transcription	Psoas Muscle	Psoas
29	chr11:45941200-45943000	Weak transcription	Gastric	stomach
30	chr11:45941200-45943400	Weak transcription	Left Ventricle	heart
31	chr11:45941200-45943400	Weak transcription	Spleen	Spleen
32	chr11:45941200-45943600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:45941200-45944000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:45941200-45953400	Weak transcription	Dnd41	blood
35	chr11:45941400-45942600	Enhancers	Fetal Intestine Small	intestine
36	chr11:45941600-45943000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:45941600-45943000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr11:45941600-45943000	Enhancers	Brain Anterior Caudate	brain
39	chr11:45941600-45943000	Enhancers	Placenta	Placenta
40	chr11:45941600-45943200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:45941600-45943200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:45941600-45943400	Enhancers	Pancreas	Pancrea
43	chr11:45941800-45942800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
44	chr11:45941800-45942800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
45	chr11:45941800-45943000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:45941800-45943200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr11:45941800-45943400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:45941800-45943400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:45942000-45942800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
50	chr11:45942000-45943000	Enhancers	H9 Cell Line	embryonic stem cell

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