Variant report

Variant	rs1455966
Chromosome Location	chr11:5090409-5090410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYA	chr11:5090302-5090487	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:5087036-5092291..11:5721056-5732713	K562	blood:

Variant related genes	Relation type
OR52E1	TF binding region
ENSG00000273085	TF binding region
ENSG00000132274	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10837269	0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1378741	0.81[ASN][1000 genomes]
rs1378743	0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs1378744	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1378745	0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1455962	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1455964	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1455965	0.84[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2219231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257785	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2412468	0.93[JPT][hapmap]
rs2442410	0.93[JPT][hapmap]
rs2442412	0.93[JPT][hapmap]
rs2442414	0.93[JPT][hapmap]
rs2442415	0.84[JPT][hapmap]
rs2445266	0.93[JPT][hapmap]
rs2445267	0.93[JPT][hapmap]
rs2445280	0.93[JPT][hapmap]
rs2445284	0.85[JPT][hapmap]
rs2445299	0.93[JPT][hapmap]
rs2445300	1.00[JPT][hapmap]
rs2445302	1.00[JPT][hapmap]
rs2445303	0.93[JPT][hapmap]
rs2445339	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2445340	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2445341	0.81[ASN][1000 genomes]
rs2445342	0.81[ASN][1000 genomes]
rs2445343	0.81[ASN][1000 genomes]
rs2445344	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2499957	0.93[JPT][hapmap]
rs2499968	0.93[JPT][hapmap]
rs2499993	0.93[JPT][hapmap]
rs2500000	0.93[JPT][hapmap]
rs2500001	0.93[JPT][hapmap]
rs2500010	0.93[JPT][hapmap]
rs2500016	0.92[JPT][hapmap]
rs2500017	0.93[JPT][hapmap]
rs2500018	0.93[JPT][hapmap]
rs2500019	0.93[JPT][hapmap]
rs2959185	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs4144717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6578549	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6578550	0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs884146	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv1046693	chr11:4958462-5177455	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv540938	chr11:4958462-5177455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2760169	chr11:4961518-5233821	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv553219	chr11:5026200-5214413	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv896919	chr11:5060941-5095774	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv896920	chr11:5068137-5221825	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
10	nsv896921	chr11:5074301-5097802	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv975827	chr11:5080931-5104221	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	esv2422503	chr11:5087292-5125991	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
13	nsv1054412	chr11:5087318-5126477	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5086200-5093000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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