Variant report

Variant	rs1456042
Chromosome Location	chr12:64451379-64451380
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11175239	0.93[CHB][hapmap];0.93[ASN][1000 genomes]
rs11175240	0.93[CHB][hapmap];0.94[ASN][1000 genomes]
rs1827074	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35181801	0.87[ASN][1000 genomes]
rs4436640	0.93[CHB][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap];0.92[ASN][1000 genomes]
rs57477949	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs717001	0.93[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap];0.94[ASN][1000 genomes]
rs789709	0.93[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs789743	0.81[EUR][1000 genomes]
rs7980231	0.85[ASN][1000 genomes]
rs7980240	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64418600-64456400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:64432000-64466400	Weak transcription	Pancreas	Pancrea
3	chr12:64433600-64452400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:64433600-64460800	Weak transcription	Aorta	Aorta
5	chr12:64433600-64474200	Weak transcription	Left Ventricle	heart
6	chr12:64433800-64452000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:64433800-64458600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr12:64433800-64460000	Weak transcription	NH-A	brain
9	chr12:64434000-64451800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:64434000-64456600	Weak transcription	HMEC	breast
11	chr12:64434000-64458200	Weak transcription	Fetal Intestine Large	intestine
12	chr12:64434000-64481600	Weak transcription	HUVEC	blood vessel
13	chr12:64434400-64452600	Weak transcription	Fetal Brain Male	brain
14	chr12:64436600-64474200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr12:64436800-64452800	Weak transcription	Fetal Muscle Leg	muscle
16	chr12:64436800-64458600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr12:64436800-64458600	Weak transcription	Fetal Stomach	stomach
18	chr12:64436800-64474200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr12:64438200-64458200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr12:64438200-64458400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr12:64440000-64458400	Weak transcription	Fetal Intestine Small	intestine
22	chr12:64440000-64479200	Weak transcription	Esophagus	oesophagus
23	chr12:64440800-64456200	Weak transcription	NHEK	skin
24	chr12:64441000-64475000	Weak transcription	Hela-S3	cervix
25	chr12:64441400-64458000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:64445200-64474200	Weak transcription	Fetal Lung	lung
27	chr12:64447000-64452800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr12:64447200-64451400	Weak transcription	NHDF-Ad	bronchial
29	chr12:64448800-64451800	Weak transcription	Brain Substantia Nigra	brain
30	chr12:64449000-64458600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:64449200-64452600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr12:64449400-64451400	Strong transcription	HSMM	muscle
33	chr12:64449400-64452000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr12:64449600-64451800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr12:64449600-64453600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr12:64449600-64458400	Weak transcription	Ovary	ovary
37	chr12:64449800-64451800	Weak transcription	Brain Hippocampus Middle	brain
38	chr12:64449800-64452000	Weak transcription	Fetal Brain Female	brain
39	chr12:64449800-64453400	Weak transcription	Psoas Muscle	Psoas
40	chr12:64449800-64455600	Weak transcription	A549	lung
41	chr12:64449800-64458400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr12:64450000-64451600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:64450000-64451800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr12:64450000-64453200	Weak transcription	Osteobl	bone
45	chr12:64450000-64453400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:64450000-64454400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr12:64450000-64456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr12:64450000-64456600	Weak transcription	Fetal Heart	heart
49	chr12:64450000-64456800	Weak transcription	Fetal Kidney	kidney
50	chr12:64450000-64456800	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links