Variant report

Variant	rs145620980
Chromosome Location	chr3:138740350-138740351
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:138740313-138740363	HRE	kidney:	n/a
2	chr3:138740313-138740363	HRPEpiC	eye:	n/a
3	chr3:138740313-138740363	Hepatocyte	liver:	n/a
4	chr3:138740313-138740363	HMEC	breast:	n/a
5	chr3:138740313-138740363	RPTEC	kidney:	n/a
6	chr3:138740313-138740363	AG09319	gingival:	n/a
7	chr3:138740313-138740363	SKMC	muscle:	n/a
8	chr3:138740313-138740363	GM19239	blood:	n/a
9	chr3:138740313-138740363	LNCaP	prostate:	n/a
10	chr3:138740313-138740363	PFSK-1	brain:	n/a
11	chr3:138740313-138740363	HUVEC	blood vessel:	n/a
12	chr3:138740313-138740363	Caco-2	colon:	n/a
13	chr3:138740313-138740363	NH-A	brain:	n/a
14	chr3:138740313-138740363	GM12878	blood:	n/a
15	chr3:138740313-138740363	SAEC	small airway:	n/a
16	chr3:138740313-138740363	T-47D	breast:	n/a
17	chr3:138740313-138740363	SK-N-SH	brain:	n/a
18	chr3:138740313-138740363	HPAEpiC	pulmonary alveolar:	n/a
19	chr3:138740313-138740363	HIPEpiC	eye:	n/a
20	chr3:138740313-138740363	PANC-1	pancreas:	n/a
21	chr3:138740313-138740363	AG10803	skin:	n/a
22	chr3:138740313-138740363	BE2_C	brain:	n/a
23	chr3:138740313-138740363	ProgFib	skin:	n/a
24	chr3:138740313-138740363	HL-60	blood:	n/a
25	chr3:138740313-138740363	SK-N-SH_RA	brain:	n/a
26	chr3:138740313-138740363	GM06990	blood:	n/a
27	chr3:138740313-138740363	HCPEpiC	choroid plexus:	n/a
28	chr3:138740313-138740363	NHBE	bronchial:	n/a
29	chr3:138740313-138740363	BJ	skin:	n/a
30	chr3:138740313-138740363	HCF	heart:	n/a
31	chr3:138740313-138740363	HepG2	liver:	n/a
32	chr3:138740313-138740363	MCF10A-Er-Src	breast:	n/a
33	chr3:138740313-138740363	HEK293	kidney:	embryo
34	chr3:138740313-138740363	ovcar-3	ovarian:	n/a
35	chr3:138740313-138740363	HRCEpiC	kidney:	n/a
36	chr3:138740313-138740363	HEEpiC	esophagus:	n/a
37	chr3:138740313-138740363	AG09309	skin:	n/a
38	chr3:138740313-138740363	H1-hESC	embryonic stem cell:	embryo
39	chr3:138740313-138740363	SK-N-MC	brain:	n/a
40	chr3:138740313-138740363	AG04450	lung:	fetal
41	chr3:138740313-138740363	GM12891	blood:	n/a
42	chr3:138740313-138740363	GM12892	blood:	n/a
43	chr3:138740313-138740363	HCT-116	colon:	n/a
44	chr3:138740313-138740363	ECC-1	luminal epithelium:	n/a
45	chr3:138740313-138740363	IMR90	lung:	fetal
46	chr3:138740313-138740363	HAEpiC	amniotic membrane:	n/a
47	chr3:138740313-138740363	U87	brain:	n/a
48	chr3:138740313-138740363	CMK	blood:	n/a
49	chr3:138740313-138740363	A549	lung:	n/a
50	chr3:138740313-138740363	NT2-D1	testis:	n/a

No data

Variant related genes	Relation type
PRR23B	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002612	chr3:138213274-138831792	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv536726	chr3:138213274-138831792	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv869205	chr3:138248190-138775288	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv591854	chr3:138348081-138764229	Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv877542	chr3:138645013-138750904	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv591855	chr3:138720204-138742147	ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
8	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3349122	chr3:138739730-138763779	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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