Variant report

Variant	rs145665500
Chromosome Location	chr4:6925181-6925182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6924422..6927283-chr4:6930396..6933115,3	K562	blood:
2	chr4:6917201..6921579-chr4:6924492..6930074,6	MCF-7	breast:
3	chr4:6909963..6912664-chr4:6925024..6930247,5	MCF-7	breast:
4	chr4:6925139..6926793-chr4:6927424..6929653,2	K562	blood:
5	chr4:6910406..6912852-chr4:6922580..6925355,2	MCF-7	breast:
6	chr4:6918829..6920609-chr4:6923833..6926676,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3400936	chr4:6925101-6927799	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6912600-6925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:6913200-6925200	Weak transcription	NHLF	lung
3	chr4:6918600-6925200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:6918600-6925200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:6918600-6925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:6918800-6925200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:6918800-6925200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:6918800-6925400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:6919000-6925200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:6919000-6925200	Weak transcription	NHEK	skin
11	chr4:6919000-6928000	Weak transcription	Fetal Kidney	kidney
12	chr4:6919200-6925400	Weak transcription	HSMMtube	muscle
13	chr4:6919600-6925200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:6919600-6925200	Weak transcription	Ovary	ovary
15	chr4:6919600-6925600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:6919600-6942200	Weak transcription	Hela-S3	cervix
17	chr4:6920000-6925200	Weak transcription	Brain Angular Gyrus	brain
18	chr4:6920200-6925200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:6920200-6925200	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:6920200-6925200	Weak transcription	Right Ventricle	heart
21	chr4:6920200-6925400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:6920200-6927600	Weak transcription	Right Atrium	heart
23	chr4:6920200-6939600	Weak transcription	HUVEC	blood vessel
24	chr4:6920400-6925200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:6920400-6925200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:6920400-6925200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr4:6920400-6925200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:6920400-6925200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr4:6920400-6925200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:6920400-6925200	Weak transcription	Brain Germinal Matrix	brain
31	chr4:6920400-6925200	Weak transcription	Left Ventricle	heart
32	chr4:6920400-6925200	Weak transcription	A549	lung
33	chr4:6920400-6925400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr4:6920400-6925400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr4:6920400-6925400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:6920400-6925400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:6920400-6925400	Weak transcription	Pancreas	Pancrea
38	chr4:6920400-6925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:6920400-6928600	Weak transcription	Psoas Muscle	Psoas
40	chr4:6920400-6931000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr4:6920600-6925200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr4:6920800-6925200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr4:6920800-6925200	Weak transcription	Adipose Nuclei	Adipose
44	chr4:6920800-6925200	Weak transcription	Fetal Muscle Leg	muscle
45	chr4:6920800-6925200	Weak transcription	Placenta	Placenta
46	chr4:6920800-6925200	Weak transcription	Lung	lung
47	chr4:6920800-6925200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:6920800-6925200	Weak transcription	Small Intestine	intestine
49	chr4:6921000-6925600	Weak transcription	Fetal Lung	lung
50	chr4:6921400-6925600	Weak transcription	Primary hematopoietic stem cells	blood

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