Variant report

Variant	rs145696058
Chromosome Location	chr6:110385144-110385145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1017551	chr6:110385054-110413225	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110383200-110391000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:110383800-110385200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:110383800-110385200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:110383800-110386000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr6:110383800-110386200	Enhancers	Fetal Thymus	thymus
6	chr6:110384000-110385600	Enhancers	Primary T cells from cord blood	blood
7	chr6:110384000-110385800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:110384000-110386000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:110384000-110386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:110384000-110387600	Enhancers	Thymus	Thymus
11	chr6:110384200-110385800	Enhancers	Dnd41	blood
12	chr6:110384400-110387200	Enhancers	Primary B cells from cord blood	blood
13	chr6:110384400-110387200	Enhancers	GM12878-XiMat	blood
14	chr6:110384600-110385200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:110384600-110385200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:110384600-110387600	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:110384800-110385200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:110384800-110385400	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links