Variant report

Variant	rs145759320
Chromosome Location	chr10:43047075-43047076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr10:43046914-43048474	HEK293-T-REx	kidney:	n/a	n/a
2	MAX	chr10:43047005-43048774	K562	blood:	n/a	n/a
3	E2F6	chr10:43047067-43047999	K562	blood:	n/a	chr10:43047814-43047825
4	POLR2A	chr10:43047057-43047157	MCF-7	breast:	n/a	n/a
5	POLR2A	chr10:43047064-43047246	MCF-7	breast:	n/a	n/a
6	POLR2A	chr10:43047044-43047359	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43046301..43049301-chr10:43278095..43279962,3	K562	blood:
2	chr10:43043951..43049889-chr10:43132519..43135803,5	K562	blood:
3	chr10:43046145..43048386-chr10:43132522..43135382,4	MCF-7	breast:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF33B-4	chr10:43047021-43047262	NONHSAT012887
2	lnc-ZNF33B-4	chr10:43047025-43048044	NONHSAT012891
3	lnc-ZNF33B-4	chr10:43047025-43047262	NONHSAT012892
4	lnc-ZNF33B-4	chr10:43047025-43047739	NONHSAT012893
5	lnc-ZNF33B-4	chr10:43047025-43047262	NONHSAT012895
6	lnc-ZNF33B-4	chr10:43047021-43047262	NONHSAT012899
7	lnc-ZNF33B-4	chr10:43047025-43048236	NONHSAT012894
8	lnc-ZNF33B-4	chr10:43047025-43047306	NONHSAT012896
9	lnc-ZNF33B-4	chr10:43046966-43047262	NONHSAT012902
10	lnc-ZNF33B-4	chr10:43047021-43048044	NONHSAT012901

No data

Variant related genes	Relation type
FXYD6P1	TF binding region
ENSG00000165733	Chromatin interaction
ENSG00000272373	Chromatin interaction
ENSG00000196693	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550670	chr10:42725663-43089965	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895054	chr10:42761931-43068841	ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv466877	chr10:42794125-43066414	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv550683	chr10:42794125-43066414	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
10	nsv895071	chr10:42864138-43066414	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv895073	chr10:42884169-43066505	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
14	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
15	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
17	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
18	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
19	nsv948326	chr10:43045385-43047970	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv8625	chr10:43046814-43052296	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43035000-43047400	Weak transcription	Stomach Mucosa	stomach
2	chr10:43035600-43047200	Weak transcription	Colonic Mucosa	Colon
3	chr10:43039800-43047200	Weak transcription	Psoas Muscle	Psoas
4	chr10:43041800-43047200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:43043200-43047400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:43043400-43047200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:43044200-43047200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:43044800-43047400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:43045400-43047200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:43045400-43047200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:43045800-43047200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:43046200-43047200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:43046200-43047200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:43046200-43047200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:43046200-43047200	Enhancers	HUVEC	blood vessel
16	chr10:43046200-43048000	Flanking Active TSS	Dnd41	blood
17	chr10:43046400-43047200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:43046400-43047200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr10:43046600-43047200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:43046600-43047200	Enhancers	Fetal Lung	lung
21	chr10:43046600-43047800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr10:43046600-43047800	Flanking Active TSS	Fetal Brain Female	brain
23	chr10:43046800-43047200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:43046800-43047200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:43046800-43047200	Enhancers	Primary B cells from cord blood	blood
26	chr10:43046800-43047200	Enhancers	Primary B cells from peripheral blood	blood
27	chr10:43046800-43047200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr10:43046800-43047200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:43046800-43047200	Enhancers	Fetal Muscle Leg	muscle
30	chr10:43046800-43047400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr10:43046800-43047400	Enhancers	Primary hematopoietic stem cells	blood
32	chr10:43046800-43047400	Enhancers	Small Intestine	intestine
33	chr10:43046800-43047400	Enhancers	Spleen	Spleen
34	chr10:43046800-43047600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:43046800-43047600	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr10:43046800-43047600	Enhancers	Placenta Amnion	Placenta Amnion
37	chr10:43046800-43047600	Flanking Active TSS	HepG2	liver
38	chr10:43046800-43047800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr10:43046800-43047800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:43046800-43047800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:43046800-43047800	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr10:43046800-43047800	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr10:43046800-43047800	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr10:43046800-43047800	Flanking Active TSS	GM12878-XiMat	blood
45	chr10:43046800-43047800	Flanking Active TSS	Hela-S3	cervix
46	chr10:43046800-43048000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:43046800-43048000	Flanking Active TSS	K562	blood
48	chr10:43047000-43047200	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr10:43047000-43047200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:43047000-43047200	Active TSS	iPS-20b Cell Line	embryonic stem cell

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