Variant report

Variant	rs145807263
Chromosome Location	chr6:144386007-144386008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:144384934-144386753	GM12892	blood:	n/a	n/a
2	POLR2A	chr6:144384538-144386734	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:144384547-144387139	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:144385041-144386623	GM12891	blood:	n/a	n/a
5	TAL1	chr6:144385047-144386461	K562	blood:	n/a	n/a
6	RELA	chr6:144384589-144386806	GM12891	blood:	n/a	n/a
7	RCOR1	chr6:144385765-144386237	K562	blood:	n/a	n/a
8	CHD1	chr6:144384197-144386703	GM12878	blood:	n/a	chr6:144384944-144384954 chr6:144385541-144385551
9	RELA	chr6:144385715-144386842	GM19099	blood:	n/a	n/a
10	UBTF	chr6:144384850-144386129	K562	blood:	n/a	n/a
11	E2F6	chr6:144384531-144386215	K562	blood:	n/a	chr6:144385529-144385538 chr6:144384905-144384913 chr6:144384906-144384913 chr6:144384905-144384913 chr6:144385180-144385189 chr6:144385247-144385256 chr6:144384946-144384955 chr6:144385722-144385737 chr6:144384987-144384996 chr6:144385721-144385730
12	YY1	chr6:144385044-144386010	GM12878	blood:	n/a	chr6:144385721-144385730 chr6:144385527-144385541 chr6:144385454-144385468 chr6:144385172-144385186 chr6:144385180-144385189 chr6:144385247-144385261
13	MAX	chr6:144384809-144386411	NB4	blood:	n/a	chr6:144385471-144385480 chr6:144385575-144385585 chr6:144385185-144385195 chr6:144385507-144385516 chr6:144385471-144385481 chr6:144385470-144385481 chr6:144385472-144385479
14	PML	chr6:144384510-144386835	GM12878	blood:	n/a	n/a
15	MXI1	chr6:144384328-144387020	GM12878	blood:	n/a	chr6:144386324-144386333
16	TAF1	chr6:144385010-144386119	GM12878	blood:	n/a	n/a
17	MYC	chr6:144384693-144386469	K562	blood:	n/a	chr6:144385471-144385480 chr6:144385575-144385585 chr6:144385185-144385195 chr6:144385507-144385516 chr6:144385471-144385481 chr6:144385470-144385481 chr6:144385472-144385479
18	RELA	chr6:144384524-144387008	GM18951	blood:	n/a	n/a
19	MAZ	chr6:144384390-144386143	K562	blood:	n/a	chr6:144385471-144385480 chr6:144385575-144385585 chr6:144385185-144385195 chr6:144385507-144385516 chr6:144385471-144385481 chr6:144385470-144385481 chr6:144385472-144385479
20	POLR2A	chr6:144384669-144386491	K562	blood:	n/a	n/a
21	MYC	chr6:144384393-144386422	K562	blood:	n/a	chr6:144385471-144385480 chr6:144385575-144385585 chr6:144385185-144385195 chr6:144385507-144385516 chr6:144385471-144385481 chr6:144385470-144385481 chr6:144385472-144385479
22	ELF1	chr6:144384735-144386027	GM12878	blood:	n/a	chr6:144385297-144385309
23	POLR2A	chr6:144384431-144386642	GM12892	blood:	n/a	n/a
24	MXI1	chr6:144385909-144386103	K562	blood:	n/a	n/a
25	RUNX3	chr6:144384640-144386777	GM12878	blood:	n/a	n/a
26	ATF2	chr6:144384629-144386093	GM12878	blood:	n/a	n/a
27	EGR1	chr6:144384562-144386154	HCT-116	colon:	n/a	chr6:144385498-144385511 chr6:144385534-144385544 chr6:144385835-144385844 chr6:144385834-144385847 chr6:144385835-144385845 chr6:144385831-144385845 chr6:144385834-144385847 chr6:144385834-144385844 chr6:144385829-144385851 chr6:144385179-144385189 chr6:144385530-144385543 chr6:144384947-144384960 chr6:144385834-144385847 chr6:144385833-144385848 chr6:144385835-144385846 chr6:144385297-144385307 chr6:144385833-144385847
28	POLR2A	chr6:144384322-144387098	GM12878	blood:	n/a	n/a
29	POLR2A	chr6:144384210-144386805	GM19193	blood:	n/a	n/a
30	POLR2A	chr6:144384676-144386175	K562	blood:	n/a	n/a
31	CREB1	chr6:144384726-144386614	GM12878	blood:	n/a	n/a
32	CBX3	chr6:144385657-144386255	K562	blood:	n/a	n/a
33	EBF1	chr6:144385777-144386854	GM12878	blood:	n/a	n/a
34	TBL1XR1	chr6:144384272-144386715	GM12878	blood:	n/a	n/a
35	E2F6	chr6:144384476-144386514	K562	blood:	n/a	chr6:144385529-144385538 chr6:144384905-144384913 chr6:144384906-144384913 chr6:144384905-144384913 chr6:144385180-144385189 chr6:144385247-144385256 chr6:144384946-144384955 chr6:144385722-144385737 chr6:144384987-144384996 chr6:144385721-144385730
36	POLR2A	chr6:144384501-144386237	K562	blood:	n/a	n/a
37	POLR2A	chr6:144384686-144386032	HL-60	blood:	n/a	n/a
38	EGR1	chr6:144385623-144386094	MCF-7	breast:	n/a	chr6:144385835-144385844 chr6:144385834-144385847 chr6:144385835-144385845 chr6:144385831-144385845 chr6:144385834-144385847 chr6:144385834-144385844 chr6:144385829-144385851 chr6:144385834-144385847 chr6:144385833-144385848 chr6:144385835-144385846 chr6:144385833-144385847
39	ATF2	chr6:144385695-144386822	GM12878	blood:	n/a	n/a
40	POLR2A	chr6:144383930-144387149	GM12891	blood:	n/a	n/a
41	POLR2A	chr6:144384744-144386488	K562	blood:	n/a	n/a
42	POLR2A	chr6:144384740-144386700	GM12891	blood:	n/a	n/a
43	POLR2A	chr6:144384115-144386109	Raji	blood:	n/a	n/a
44	TAF1	chr6:144385042-144386046	K562	blood:	n/a	n/a
45	ZEB1	chr6:144385256-144386024	GM12878	blood:	n/a	chr6:144385583-144385590
46	MAX	chr6:144384372-144386473	K562	blood:	n/a	chr6:144385471-144385480 chr6:144385575-144385585 chr6:144385185-144385195 chr6:144385507-144385516 chr6:144385471-144385481 chr6:144385470-144385481 chr6:144385472-144385479
47	POLR2A	chr6:144384572-144386742	GM12878	blood:	n/a	n/a
48	MYC	chr6:144384823-144386397	NB4	blood:	n/a	chr6:144385471-144385480 chr6:144385575-144385585 chr6:144385185-144385195 chr6:144385507-144385516 chr6:144385471-144385481 chr6:144385470-144385481 chr6:144385472-144385479
49	UBTF	chr6:144385020-144386062	K562	blood:	n/a	n/a
50	TAF1	chr6:144385705-144386051	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:144384139..144386162-chr6:144415974..144418368,2	MCF-7	breast:
2	chr6:143998295..144000747-chr6:144385501..144387723,2	K562	blood:
3	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
4	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
5	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
6	chr6:143882307..143884065-chr6:144383379..144386197,2	K562	blood:

Variant related genes	Relation type
PLAGL1	TF binding region
ENSG00000169976	Chromatin interaction
ENSG00000235740	Chromatin interaction
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358461	chr6:144384284-144386832	Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144383600-144387000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:144384200-144386200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr6:144384200-144386200	Active TSS	Rectal Smooth Muscle	rectum
4	chr6:144384200-144386200	Bivalent/Poised TSS	NHDF-Ad	bronchial
5	chr6:144384400-144386200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:144384400-144386200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr6:144384400-144386400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:144384600-144386200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:144384600-144386200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:144384600-144386200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:144384600-144386200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
12	chr6:144384600-144386200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:144384600-144386200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:144384600-144386200	Active TSS	Left Ventricle	heart
15	chr6:144384600-144386200	Active TSS	Ovary	ovary
16	chr6:144384600-144386200	Active TSS	Right Ventricle	heart
17	chr6:144384600-144386200	Active TSS	Small Intestine	intestine
18	chr6:144384600-144386200	Bivalent/Poised TSS	Stomach Mucosa	stomach
19	chr6:144384600-144386200	Bivalent/Poised TSS	A549	lung
20	chr6:144384600-144386200	Bivalent/Poised TSS	HSMM	muscle
21	chr6:144384600-144386400	Active TSS	Aorta	Aorta
22	chr6:144384600-144386400	Active TSS	Colonic Mucosa	Colon
23	chr6:144384600-144386600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:144384600-144386800	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr6:144384800-144386200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr6:144384800-144386200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr6:144384800-144386200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
28	chr6:144384800-144386200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr6:144384800-144386200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:144384800-144386200	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr6:144384800-144386200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
32	chr6:144384800-144386200	Active TSS	Gastric	stomach
33	chr6:144384800-144386200	Active TSS	K562	blood
34	chr6:144384800-144386400	Active TSS	Esophagus	oesophagus
35	chr6:144384800-144386800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:144385000-144386200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:144385000-144386200	Active TSS	Brain Angular Gyrus	brain
38	chr6:144385000-144386200	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr6:144385000-144386200	Active TSS	Duodenum Mucosa	Duodenum
40	chr6:144385000-144386200	Bivalent/Poised TSS	Fetal Brain Female	brain
41	chr6:144385000-144386200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
42	chr6:144385000-144386200	Bivalent/Poised TSS	Fetal Lung	lung
43	chr6:144385000-144386400	Active TSS	Liver	Liver
44	chr6:144385000-144386400	Active TSS	Lung	lung
45	chr6:144385000-144386400	Active TSS	Pancreas	Pancrea
46	chr6:144385000-144386600	Active TSS	GM12878-XiMat	blood
47	chr6:144385200-144386200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:144385200-144386200	Bivalent/Poised TSS	NHLF	lung
49	chr6:144385200-144386400	Active TSS	Primary T cells from cord blood	blood
50	chr6:144385200-144386400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links