Variant report

Variant	rs145887428
Chromosome Location	chr16:71882951-71882952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71879516..71883331-chr16:71913609..71918904,8	MCF-7	breast:
2	chr16:71841492..71844076-chr16:71882492..71884911,2	MCF-7	breast:
3	chr16:71840076..71845074-chr16:71882668..71886861,6	K562	blood:
4	chr16:71881961..71883850-chr16:71918320..71920311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261765	Chromatin interaction
ENSG00000182149	Chromatin interaction
ENSG00000102984	Chromatin interaction
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv978166	chr16:71882680-71886018	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71881000-71902200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:71881200-71883200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:71881200-71883200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:71881200-71883200	Weak transcription	Brain Substantia Nigra	brain
5	chr16:71881200-71883200	Weak transcription	Pancreas	Pancrea
6	chr16:71881200-71883200	Weak transcription	Right Ventricle	heart
7	chr16:71881200-71883800	Weak transcription	Fetal Lung	lung
8	chr16:71881200-71889400	Weak transcription	Psoas Muscle	Psoas
9	chr16:71881200-71916600	Weak transcription	Small Intestine	intestine
10	chr16:71881400-71883000	Weak transcription	HSMMtube	muscle
11	chr16:71881400-71883200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr16:71881400-71883400	Weak transcription	Colon Smooth Muscle	Colon
13	chr16:71881600-71883000	Weak transcription	HMEC	breast
14	chr16:71881600-71883200	Weak transcription	NHLF	lung
15	chr16:71881600-71883600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr16:71881600-71885600	Weak transcription	Fetal Brain Male	brain
17	chr16:71881600-71887200	Weak transcription	Fetal Heart	heart
18	chr16:71881800-71883600	Strong transcription	Hela-S3	cervix
19	chr16:71881800-71884800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
20	chr16:71881800-71885000	Strong transcription	Adipose Nuclei	Adipose
21	chr16:71881800-71885200	Strong transcription	NHDF-Ad	bronchial
22	chr16:71881800-71885400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr16:71881800-71886000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr16:71881800-71886000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr16:71881800-71886600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr16:71881800-71886600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr16:71881800-71887000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr16:71881800-71887200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr16:71881800-71887200	Strong transcription	Primary T cells from cord blood	blood
30	chr16:71881800-71887200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr16:71881800-71887400	Strong transcription	Fetal Intestine Large	intestine
32	chr16:71881800-71887800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr16:71881800-71887800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr16:71881800-71888000	Strong transcription	NHEK	skin
35	chr16:71881800-71889200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr16:71881800-71890000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr16:71881800-71890200	Strong transcription	Placenta	Placenta
38	chr16:71881800-71890200	Strong transcription	Osteobl	bone
39	chr16:71881800-71890400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr16:71881800-71890800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr16:71881800-71890800	Strong transcription	Fetal Muscle Leg	muscle
42	chr16:71881800-71895800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr16:71881800-71897000	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr16:71881800-71899000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr16:71881800-71902000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr16:71881800-71904600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr16:71881800-71914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr16:71881800-71914600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr16:71882000-71883200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr16:71882000-71884200	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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