Variant report

Variant	rs145946408
Chromosome Location	chr5:92498272-92498273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92492798..92494347-chr5:92496334..92499006,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv980697	chr5:92498149-92499469	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92496200-92498600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
2	chr5:92496400-92498600	Enhancers	Fetal Stomach	stomach
3	chr5:92496400-92500800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:92496400-92500800	Enhancers	HMEC	breast
5	chr5:92496600-92499400	Enhancers	Fetal Lung	lung
6	chr5:92496600-92500600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr5:92496600-92500800	Enhancers	NHLF	lung
8	chr5:92497000-92498400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:92497000-92498400	Enhancers	Fetal Muscle Leg	muscle
10	chr5:92497000-92499400	Enhancers	Adipose Nuclei	Adipose
11	chr5:92497200-92498400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:92497200-92499000	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:92497200-92499200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:92497200-92499400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr5:92497400-92499400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:92497600-92498400	Enhancers	Brain Germinal Matrix	brain
17	chr5:92497600-92498800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:92497600-92499400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr5:92497600-92499400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:92497600-92499400	Enhancers	Fetal Kidney	kidney
21	chr5:92497600-92499600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:92497800-92498400	Enhancers	Brain Angular Gyrus	brain
23	chr5:92497800-92498400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:92497800-92498400	Enhancers	Fetal Brain Male	brain
25	chr5:92497800-92498600	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr5:92497800-92498800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:92497800-92499000	Flanking Active TSS	NH-A	brain
28	chr5:92497800-92499200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr5:92497800-92499400	Enhancers	Hela-S3	cervix
30	chr5:92498000-92498400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr5:92498000-92498400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr5:92498000-92498400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr5:92498000-92498400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:92498000-92498400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr5:92498000-92498400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr5:92498000-92498400	Enhancers	Brain Anterior Caudate	brain
37	chr5:92498000-92498400	Enhancers	Brain Hippocampus Middle	brain
38	chr5:92498000-92498400	Enhancers	Ovary	ovary
39	chr5:92498000-92498400	Enhancers	Rectal Smooth Muscle	rectum
40	chr5:92498000-92498400	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr5:92498000-92498400	Enhancers	Small Intestine	intestine
42	chr5:92498000-92498400	Flanking Active TSS	HSMMtube	muscle
43	chr5:92498000-92498600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr5:92498000-92498600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:92498000-92498600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr5:92498000-92498600	Enhancers	Brain Substantia Nigra	brain
47	chr5:92498000-92498600	Flanking Active TSS	Osteobl	bone
48	chr5:92498000-92499000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr5:92498000-92499000	Enhancers	Brain Cingulate Gyrus	brain
50	chr5:92498000-92499000	Enhancers	Stomach Smooth Muscle	stomach

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