Variant report
| Variant | rs1459556 |
|---|---|
| Chromosome Location | chr4:118611865-118611866 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NDST3-4 | chr4:118610091-118612343 | ENSG00000236922.5 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs1459554 | 0.86[AFR][1000 genomes] |
| rs1459555 | 0.86[AFR][1000 genomes] |
| rs2635205 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs3816597 | 0.98[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879834 | chr4:118532627-118663111 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv879835 | chr4:118545387-118622573 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3399086 | chr4:118598398-118625286 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 4 | esv3336477 | chr4:118598398-118639356 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv879837 | chr4:118599194-118650042 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1459556 | METTL14 | cis | brain | BrainEAC |
Chromatin state (count:0 , 50 per page) page:
| No data |
