Variant report

Variant	rs145977482
Chromosome Location	chr5:52231755-52231756
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462187	chr5:51758804-52333420	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv598163	chr5:51758804-52333420	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv471013	chr5:51779197-52339114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv830295	chr5:52084532-52257696	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv830296	chr5:52209528-52410253	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3352710	chr5:52227995-52232293	Weak transcription Strong transcription Enhancers Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
8	esv3367083	chr5:52231145-52233143	Weak transcription Genic enhancers Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
9	esv2590093	chr5:52231345-52233023	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
10	esv2399032	chr5:52231593-52232317	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv8218	chr5:52231596-52232353	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3469226	chr5:52231665-52232195	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3506006	chr5:52231686-52232223	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3506005	chr5:52231693-52232228	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3506011	chr5:52231702-52232141	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
16	esv3469224	chr5:52231710-52232178	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
17	esv3469222	chr5:52231711-52232175	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3469225	chr5:52231722-52232132	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv3506010	chr5:52231723-52232164	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
20	esv3407	chr5:52231739-52232167	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3380029	chr5:52231743-52232134	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv3506008	chr5:52231744-52232153	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
23	esv3469223	chr5:52231755-52232114	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52202200-52252200	Weak transcription	Small Intestine	intestine
2	chr5:52206400-52240800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:52211400-52239400	Weak transcription	Right Ventricle	heart
4	chr5:52211400-52240200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:52211600-52244400	Weak transcription	HepG2	liver
6	chr5:52212200-52237400	Strong transcription	Liver	Liver
7	chr5:52218600-52237000	Weak transcription	Psoas Muscle	Psoas
8	chr5:52218600-52239400	Weak transcription	Ovary	ovary
9	chr5:52218600-52242200	Weak transcription	Fetal Kidney	kidney
10	chr5:52218800-52240800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:52219200-52235200	Weak transcription	NHDF-Ad	bronchial
12	chr5:52219200-52240800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:52219200-52240800	Weak transcription	NHLF	lung
14	chr5:52220000-52243000	Weak transcription	Gastric	stomach
15	chr5:52220400-52239400	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:52220600-52232200	Weak transcription	Spleen	Spleen
17	chr5:52220600-52235600	Weak transcription	Fetal Intestine Small	intestine
18	chr5:52220600-52236600	Weak transcription	Lung	lung
19	chr5:52220600-52252000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:52221400-52240600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:52221400-52251800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:52223800-52231800	Strong transcription	Colon Smooth Muscle	Colon
23	chr5:52224000-52235200	Weak transcription	Fetal Intestine Large	intestine
24	chr5:52224000-52236800	Weak transcription	Aorta	Aorta
25	chr5:52224000-52239400	Weak transcription	Fetal Stomach	stomach
26	chr5:52224200-52244600	Weak transcription	Primary T cells from cord blood	blood
27	chr5:52225200-52232200	Weak transcription	Left Ventricle	heart
28	chr5:52225200-52239800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr5:52227000-52240800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:52228400-52232200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:52228400-52235200	Weak transcription	Fetal Lung	lung
32	chr5:52228400-52240800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr5:52228600-52232200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:52228600-52232200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:52228600-52232200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr5:52228600-52232400	Weak transcription	Adipose Nuclei	Adipose
37	chr5:52228600-52234600	Weak transcription	Placenta	Placenta
38	chr5:52228600-52235400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:52229000-52246600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:52229200-52232200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:52229200-52236600	Weak transcription	Dnd41	blood
42	chr5:52229600-52232400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:52231200-52232400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:52231600-52245400	Weak transcription	Colonic Mucosa	Colon

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