Variant report

Variant	rs1459783
Chromosome Location	chr5:113794087-113794088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10519384	0.90[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1459779	0.82[YRI][hapmap]
rs1459782	0.87[YRI][hapmap]
rs1599176	0.85[LWK][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs1975851	0.88[YRI][hapmap]
rs2007196	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs2125773	0.83[LWK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs898355	0.90[LWK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113792800-113794200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:113793000-113794800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:113793000-113794800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:113793200-113794200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:113793400-113798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:113793600-113799400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:113793600-113799400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:113793600-113812800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:113793800-113796400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:113793800-113812800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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