Variant report

Variant	rs146001491
Chromosome Location	chr5:41968544-41968545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:41968520-41968670	GM12875	blood:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
2	CTCF	chr5:41968540-41968690	HMF	breast:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
3	CTCF	chr5:41968540-41968690	HMEC	breast:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
4	CTCF	chr5:41968440-41968590	HRPEpiC	eye:	n/a	n/a
5	CTCF	chr5:41968520-41968670	HFF-Myc	foreskin:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
6	CTCF	chr5:41968460-41968610	GM12871	blood:	n/a	n/a
7	CTCF	chr5:41968520-41968670	AoAF	blood vessel:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
8	CTCF	chr5:41968480-41968630	SK-N-SH_RA	brain:	n/a	n/a
9	CTCF	chr5:41968480-41968630	HCT-116	colon:	n/a	n/a
10	CTCF	chr5:41968540-41968690	HCFaa	heart:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
11	CTCF	chr5:41968500-41968650	GM12864	blood:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
12	CTCF	chr5:41968480-41968630	NHEK	skin:	n/a	n/a
13	ZNF143	chr5:41968510-41968710	K562	blood:	n/a	n/a
14	CTCF	chr5:41968520-41968670	HUVEC	blood vessel:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
15	CTCF	chr5:41968480-41968630	HFF-Myc	foreskin:	n/a	n/a
16	POLR2A	chr5:41967933-41968821	K562	blood:	n/a	n/a
17	CTCF	chr5:41968520-41968670	BE2_C	brain:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
18	CTCF	chr5:41968460-41968610	GM12866	blood:	n/a	n/a
19	CTCF	chr5:41968383-41968718	K562	blood:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
20	CTCF	chr5:41968500-41968650	RPTEC	kidney:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
21	CTCF	chr5:41968540-41968690	K562	blood:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
22	CTCF	chr5:41968520-41968670	AG09319	gingival:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
23	CTCF	chr5:41968479-41968827	K562	blood:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
24	CTCF	chr5:41968540-41968690	AG04450	lung:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
25	CTCF	chr5:41968540-41968690	HPAF	blood vessel:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
26	CTCF	chr5:41968460-41968610	AG09309	skin:	n/a	n/a
27	CTCF	chr5:41968540-41968690	MCF-7	breast:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
28	CTCF	chr5:41968500-41968650	GM12874	blood:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
29	CTCF	chr5:41968540-41968690	AG09309	skin:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
30	CTCF	chr5:41968520-41968670	HBMEC	blood vessel:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
31	CTCF	chr5:41968541-41968675	SK-N-SH_RA	brain:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
32	CTCF	chr5:41968540-41968690	GM12871	blood:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
33	CTCF	chr5:41968520-41968670	HRPEpiC	eye:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
34	CTCF	chr5:41968500-41968650	Hela-S3	cervix:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
35	CTCF	chr5:41968500-41968650	BE2_C	brain:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
36	CTCF	chr5:41968540-41968690	HVMF	connective:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
37	CTCF	chr5:41968534-41968711	K562	blood:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
38	CTCF	chr5:41968520-41968670	HepG2	liver:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
39	CTCF	chr5:41968500-41968650	BJ	skin:	n/a	chr5:41968629-41968638 chr5:41968626-41968644
40	CTCF	chr5:41968520-41968670	HFF	foreskin:	n/a	chr5:41968629-41968638 chr5:41968626-41968644

Variant related genes	Relation type
ENSG00000199487	TF binding region
MTHFD2P6	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830272	chr5:41833365-41986167	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
2	nsv830273	chr5:41867296-42066070	Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
3	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
4	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
5	nsv880627	chr5:41966551-42087954	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links