Variant report

Variant	rs146002567
Chromosome Location	chr4:86491654-86491655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr4:86491600-86491715	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ARHGAP24	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	esv2228589	chr4:86491339-86491737	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86476800-86491800	Weak transcription	NHDF-Ad	bronchial
2	chr4:86477000-86493000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:86477600-86494600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:86478000-86501000	Weak transcription	Right Ventricle	heart
5	chr4:86479000-86493800	Weak transcription	Spleen	Spleen
6	chr4:86486000-86509200	Weak transcription	Left Ventricle	heart
7	chr4:86487000-86509200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:86487200-86491800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:86487200-86521200	Weak transcription	HSMMtube	muscle
10	chr4:86488000-86492400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:86488200-86491800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:86488800-86491800	Weak transcription	Primary B cells from cord blood	blood
13	chr4:86488800-86512400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:86489000-86493200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:86489400-86492400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:86490200-86491800	Weak transcription	Adipose Nuclei	Adipose
17	chr4:86490600-86492000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:86491000-86492000	Enhancers	HMEC	breast
19	chr4:86491200-86491800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr4:86491200-86491800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr4:86491200-86492000	Genic enhancers	HSMM	muscle
22	chr4:86491200-86494800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:86491400-86491800	Enhancers	GM12878-XiMat	blood
24	chr4:86491400-86494000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:86491600-86492200	Genic enhancers	Primary B cells from peripheral blood	blood
26	chr4:86491600-86492600	Strong transcription	Fetal Muscle Leg	muscle
27	chr4:86491600-86494800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr4:86491600-86497400	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links