Variant report

Variant	rs146003773
Chromosome Location	chr12:105837465-105837466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105828600-105838200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:105832800-105837800	Weak transcription	Gastric	stomach
3	chr12:105836600-105840600	Enhancers	HSMMtube	muscle
4	chr12:105836800-105840200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:105837000-105839600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:105837000-105840400	Enhancers	HSMM	muscle
7	chr12:105837200-105837800	Enhancers	Fetal Intestine Large	intestine
8	chr12:105837200-105837800	Enhancers	Fetal Intestine Small	intestine
9	chr12:105837200-105838000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:105837200-105840000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:105837400-105838600	Flanking Active TSS	Hela-S3	cervix
12	chr12:105837400-105838800	Flanking Active TSS	A549	lung
13	chr12:105837400-105839200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr12:105837400-105840400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:105837400-105840600	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links