Variant report

Variant	rs1460255
Chromosome Location	chr2:57978858-57978859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:57978678-57979106	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000271615	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10204616	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1040224	0.82[CEU][hapmap]
rs1040225	0.82[CEU][hapmap]
rs12997222	0.81[AMR][1000 genomes]
rs1401100	0.89[GIH][hapmap]
rs1568253	0.91[GIH][hapmap]
rs2465804	0.82[CEU][hapmap]
rs2678880	0.82[CEU][hapmap];0.93[GIH][hapmap]
rs2678889	0.89[GIH][hapmap]
rs2678897	0.84[GIH][hapmap]
rs2678901	0.82[CEU][hapmap]
rs2678903	0.82[CEU][hapmap]
rs2678905	0.82[CEU][hapmap]
rs2678906	0.82[CEU][hapmap]
rs2678908	0.82[CEU][hapmap];0.95[GIH][hapmap];0.84[MEX][hapmap]
rs2717001	0.82[CEU][hapmap];0.95[GIH][hapmap]
rs2717002	0.82[CEU][hapmap];0.93[GIH][hapmap]
rs2717004	0.82[CEU][hapmap]
rs2717006	0.89[CEU][hapmap]
rs2717023	0.93[GIH][hapmap]
rs2717024	0.93[GIH][hapmap]
rs2717031	0.91[GIH][hapmap]
rs2717036	0.91[GIH][hapmap]
rs2717040	0.89[GIH][hapmap]
rs3886275	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66490669	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs970941	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874193	chr2:57758608-58066673	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006688	chr2:57822953-58030203	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874197	chr2:57978858-58068741	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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