Variant report

Variant	rs1460974
Chromosome Location	chr8:20986941-20986942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:20986575..20987388-chr8:21641622..21642126,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12543521	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28854201	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28860552	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34969903	1.00[ASN][1000 genomes]
rs4739288	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71513809	1.00[ASN][1000 genomes]
rs71513810	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv469878	chr8:20955260-21128307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv482339	chr8:20955260-21128307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20982000-20989600	Enhancers	Fetal Heart	heart
2	chr8:20983400-20987000	Weak transcription	Lung	lung
3	chr8:20983400-20987200	Weak transcription	Right Atrium	heart
4	chr8:20984400-20987600	Weak transcription	Brain Germinal Matrix	brain
5	chr8:20984600-20987200	Weak transcription	Gastric	stomach
6	chr8:20984800-20987000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:20985600-20987000	Weak transcription	Pancreas	Pancrea
8	chr8:20986000-20988400	Enhancers	Right Ventricle	heart
9	chr8:20986200-20987200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:20986400-20987200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:20986400-20987600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:20986400-20988200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:20986400-20988400	Enhancers	Aorta	Aorta
14	chr8:20986400-20988600	Enhancers	Fetal Thymus	thymus
15	chr8:20986400-20989000	Enhancers	Primary hematopoietic stem cells	blood
16	chr8:20986400-20989000	Enhancers	Left Ventricle	heart
17	chr8:20986400-20989600	Enhancers	Fetal Muscle Leg	muscle
18	chr8:20986600-20988000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr8:20986800-20988400	Enhancers	Primary T cells from cord blood	blood
20	chr8:20986800-20989200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:20986800-20989200	Enhancers	Colon Smooth Muscle	Colon

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