Variant report

Variant	rs146171437
Chromosome Location	chr10:112836506-112836507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:112836470-112836574	LNCaP	prostate:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
2	CTCF	chr10:112836476-112836552	Hela-S3	cervix:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
3	CTCF	chr10:112836380-112836530	GM06990	blood:	n/a	n/a
4	CTCF	chr10:112836420-112836570	BE2_C	brain:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
5	CTCF	chr10:112836400-112836550	HCFaa	heart:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
6	REST	chr10:112835739-112837184	H1-neurons	neurons:	n/a	chr10:112836820-112836830 chr10:112837090-112837103 chr10:112836237-112836246
7	MAX	chr10:112835887-112836957	H1-hESC	embryonic stem cell:	n/a	chr10:112836707-112836716
8	CTCF	chr10:112836480-112836630	HUVEC	blood vessel:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
9	POLR2A	chr10:112836423-112837125	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr10:112836397-112836619	HepG2	liver:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
11	CTCF	chr10:112836360-112836510	HepG2	liver:	n/a	n/a
12	CTCF	chr10:112836483-112836544	ProgFib	skin:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
13	CTCF	chr10:112836440-112836590	HFF	foreskin:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
14	POLR2A	chr10:112836456-112837058	H1-neurons	neurons:	n/a	n/a
15	CTCF	chr10:112836370-112836588	A549	lung:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
16	CTCF	chr10:112836420-112836570	WERI-Rb-1	eye:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
17	E2F6	chr10:112835913-112837335	H1-hESC	embryonic stem cell:	n/a	chr10:112836146-112836153 chr10:112836146-112836153 chr10:112837296-112837305 chr10:112837053-112837063 chr10:112837056-112837066 chr10:112837052-112837061 chr10:112836116-112836125 chr10:112836146-112836153
18	RAD21	chr10:112835596-112837208	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
19	CTCF	chr10:112836500-112836650	GM12874	blood:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
20	SIN3A	chr10:112835862-112837044	H1-hESC	embryonic stem cell:	n/a	chr10:112836164-112836175 chr10:112836796-112836805
21	CTCF	chr10:112836460-112836610	SK-N-SH_RA	brain:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
22	RAD21	chr10:112835799-112837044	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
23	USF1	chr10:112836460-112836884	H1-hESC	embryonic stem cell:	n/a	chr10:112836493-112836509
24	CTCF	chr10:112836480-112836630	HRE	kidney:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
25	POLR2A	chr10:112836011-112836539	MCF-7	breast:	n/a	n/a
26	CTCF	chr10:112836440-112836590	RPTEC	kidney:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
27	CTCF	chr10:112836440-112836590	HMEC	breast:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
28	CTCF	chr10:112836460-112836610	AG10803	skin:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
29	CTCF	chr10:112836400-112836550	HFF-Myc	foreskin:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
30	CTCF	chr10:112836445-112836591	GM12891	blood:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
31	CTCF	chr10:112836380-112836530	HMF	breast:	n/a	n/a
32	USF1	chr10:112836451-112836954	ECC-1	luminal epithelium:	n/a	chr10:112836916-112836932 chr10:112836493-112836509
33	TAF1	chr10:112836495-112837011	H1-hESC	embryonic stem cell:	n/a	n/a
34	MAX	chr10:112835920-112837039	ECC-1	luminal epithelium:	n/a	chr10:112837013-112837023 chr10:112836707-112836716
35	CTCF	chr10:112836460-112836610	WERI-Rb-1	eye:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
36	CTCF	chr10:112836401-112836640	MCF-7	breast:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
37	POLR2A	chr10:112836455-112837014	H1-neurons	neurons:	n/a	n/a
38	CTCF	chr10:112835561-112837016	SK-N-SH	brain:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836706-112836719 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112836932-112836941 chr10:112835841-112835850 chr10:112836522-112836535
39	CTCF	chr10:112836380-112836530	HRE	kidney:	n/a	n/a
40	CTCF	chr10:112836480-112836534	GM13976	blood:	n/a	chr10:112836522-112836531
41	MAX	chr10:112835822-112837283	H1-hESC	embryonic stem cell:	n/a	chr10:112837013-112837023 chr10:112836707-112836716
42	RAD21	chr10:112835123-112836993	SK-N-SH	brain:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539 chr10:112835233-112835246
43	RAD21	chr10:112835734-112836726	ECC-1	luminal epithelium:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
44	RAD21	chr10:112835723-112836869	MCF-7	breast:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
45	CTCF	chr10:112836400-112836550	HEK293	kidney:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
46	CTCF	chr10:112836414-112836593	SK-N-SH_RA	brain:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
47	RAD21	chr10:112835697-112836982	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
48	CTCF	chr10:112836485-112836545	GM19238	blood:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535
49	RAD21	chr10:112836391-112836630	HepG2	liver:	n/a	chr10:112836521-112836535 chr10:112836520-112836539
50	CTCF	chr10:112836400-112836550	HCM	heart:	n/a	chr10:112836519-112836537 chr10:112836522-112836531 chr10:112836522-112836535

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:112836471-112836521	CMK	blood:	n/a
2	chr10:112836471-112836521	GM12891	blood:	n/a
3	chr10:112836471-112836521	HepG2	liver:	n/a
4	chr10:112836471-112836521	HCPEpiC	choroid plexus:	n/a
5	chr10:112836471-112836521	ovcar-3	ovarian:	n/a
6	chr10:112836471-112836521	GM12892	blood:	n/a
7	chr10:112836471-112836521	RPTEC	kidney:	n/a
8	chr10:112836471-112836521	AG10803	skin:	n/a
9	chr10:112836471-112836521	SAEC	small airway:	n/a
10	chr10:112836471-112836521	H1-hESC	embryonic stem cell:	embryo
11	chr10:112836471-112836521	LNCaP	prostate:	n/a
12	chr10:112836471-112836521	NHDF-neo	bronchial:	n/a
13	chr10:112836471-112836521	NT2-D1	testis:	n/a
14	chr10:112836471-112836521	Caco-2	colon:	n/a
15	chr10:112836471-112836521	PFSK-1	brain:	n/a
16	chr10:112836471-112836521	HRPEpiC	eye:	n/a
17	chr10:112836471-112836521	NHBE	bronchial:	n/a
18	chr10:112836471-112836521	AoSMC	blood vessel:	n/a
19	chr10:112836471-112836521	AG09309	skin:	n/a
20	chr10:112836471-112836521	HRCEpiC	kidney:	n/a
21	chr10:112836471-112836521	MCF10A-Er-Src	breast:	n/a
22	chr10:112836471-112836521	HMEC	breast:	n/a
23	chr10:112836471-112836521	U87	brain:	n/a
24	chr10:112836471-112836521	BJ	skin:	n/a
25	chr10:112836471-112836521	HCF	heart:	n/a
26	chr10:112836471-112836521	HAEpiC	amniotic membrane:	n/a
27	chr10:112836471-112836521	BE2_C	brain:	n/a
28	chr10:112836471-112836521	NH-A	brain:	n/a
29	chr10:112836471-112836521	PANC-1	pancreas:	n/a
30	chr10:112836471-112836521	HRE	kidney:	n/a
31	chr10:112836471-112836521	GM06990	blood:	n/a
32	chr10:112836471-112836521	K562	blood:	n/a
33	chr10:112836471-112836521	NB4	blood:	n/a
34	chr10:112836471-112836521	HL-60	blood:	n/a
35	chr10:112836471-112836521	HCM	heart:	n/a
36	chr10:112836471-112836521	HEEpiC	esophagus:	n/a
37	chr10:112836471-112836521	SK-N-SH_RA	brain:	n/a
38	chr10:112836471-112836521	HPAEpiC	pulmonary alveolar:	n/a
39	chr10:112836471-112836521	MCF-7	breast:	n/a
40	chr10:112836471-112836521	A549	lung:	n/a
41	chr10:112836471-112836521	Hela-S3	cervix:	n/a
42	chr10:112836471-112836521	AG04449	skin:	fetal
43	chr10:112836471-112836521	AG09319	gingival:	n/a
44	chr10:112836471-112836521	PrEC	prostate:	n/a
45	chr10:112836471-112836521	HIPEpiC	eye:	n/a
46	chr10:112836471-112836521	IMR90	lung:	fetal
47	chr10:112836471-112836521	Jurkat	blood:	n/a
48	chr10:112836471-112836521	SK-N-MC	brain:	n/a
49	chr10:112836471-112836521	Hepatocyte	liver:	n/a
50	chr10:112836471-112836521	HUVEC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112835905..112836784-chr10:113041082..113041711,3	MCF-7	breast:
2	chr10:112835831..112836588-chr10:112967176..112967740,2	MCF-7	breast:

Variant related genes	Relation type
ADRA2A	TF binding region
ADRA2A	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3321787	chr10:112835962-112840760	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112835400-112837000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:112835400-112838000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:112835600-112836600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
4	chr10:112835600-112836800	Enhancers	Spleen	Spleen
5	chr10:112835600-112837000	Flanking Active TSS	Right Ventricle	heart
6	chr10:112835600-112837200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
7	chr10:112835600-112837400	Bivalent/Poised TSS	A549	lung
8	chr10:112835600-112837800	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr10:112835600-112837800	Active TSS	Brain Angular Gyrus	brain
10	chr10:112835600-112837800	Active TSS	HSMMtube	muscle
11	chr10:112835600-112838400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
13	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
14	chr10:112835600-112839000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr10:112835600-112839000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
17	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
19	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
20	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
21	chr10:112835800-112836800	Active TSS	H9 Cell Line	embryonic stem cell
22	chr10:112835800-112836800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
23	chr10:112835800-112836800	Active TSS	Psoas Muscle	Psoas
24	chr10:112835800-112836800	Active TSS	Hela-S3	cervix
25	chr10:112835800-112837000	Active TSS	Right Atrium	heart
26	chr10:112835800-112837000	Bivalent/Poised TSS	NHLF	lung
27	chr10:112835800-112837200	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr10:112835800-112837400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr10:112835800-112837800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:112835800-112837800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
31	chr10:112835800-112837800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:112835800-112837800	Active TSS	Fetal Brain Male	brain
33	chr10:112835800-112837800	Active TSS	Ovary	ovary
34	chr10:112835800-112837800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
35	chr10:112835800-112837800	Flanking Bivalent TSS/Enh	Osteobl	bone
36	chr10:112835800-112838000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:112835800-112838000	Active TSS	HSMM	muscle
38	chr10:112835800-112838200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:112835800-112838200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:112835800-112838400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
41	chr10:112835800-112838400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
42	chr10:112835800-112838400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
43	chr10:112835800-112838400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
44	chr10:112835800-112840400	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr10:112836000-112836600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:112836000-112836600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
47	chr10:112836000-112836600	Flanking Bivalent TSS/Enh	NH-A	brain
48	chr10:112836000-112836800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
49	chr10:112836000-112836800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
50	chr10:112836000-112836800	Active TSS	Esophagus	oesophagus

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