Variant report

Variant	rs146172312
Chromosome Location	chr4:21160979-21160980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21159106..21161937-chr4:21165905..21168685,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878748	chr4:21113871-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv4264	chr4:21138131-21199262	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3430970	chr4:21159504-21168002	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1005654	chr4:21159672-21167100	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1010273	chr4:21160249-21177683	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv513123	chr4:21160314-21167128	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2637742	chr4:21160408-21167871	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3499301	chr4:21160522-21167796	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3464880	chr4:21160657-21167336	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv436408	chr4:21160662-21167279	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv435801	chr4:21160692-21167021	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv2318387	chr4:21160802-21167317	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3499303	chr4:21160871-21167216	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3499302	chr4:21160879-21167216	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3464874	chr4:21160881-21167189	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3499296	chr4:21160914-21167154	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3499300	chr4:21160919-21167134	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3464876	chr4:21160923-21167165	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3464879	chr4:21160925-21167170	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3499299	chr4:21160929-21167148	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3464878	chr4:21160939-21167125	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3499298	chr4:21160940-21167154	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3333290	chr4:21160949-21167118	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3464877	chr4:21160971-21167105	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv4912	chr4:21160973-21167419	Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21160800-21161200	Active TSS	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links