Variant report

Variant	rs146173099
Chromosome Location	chr15:56333850-56333851
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56332455..56334509-chr15:56340544..56343174,3	MCF-7	breast:
2	chr15:56321846..56324395-chr15:56332735..56334655,2	MCF-7	breast:
3	chr15:56292596..56295463-chr15:56332389..56335036,2	MCF-7	breast:
4	chr15:56284513..56287737-chr15:56330157..56337447,9	MCF-7	breast:
5	chr15:56254403..56256035-chr15:56332964..56335048,2	MCF-7	breast:
6	chr15:56284483..56288965-chr15:56332457..56336362,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239703	Chromatin interaction
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
3	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56327600-56334800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:56329400-56334800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:56329800-56335000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:56330200-56335400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:56330400-56334000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:56330400-56336400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:56330600-56334000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:56330800-56334000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:56330800-56334000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:56330800-56334600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:56330800-56336400	Enhancers	Fetal Intestine Large	intestine
12	chr15:56330800-56337400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:56331000-56334000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:56331000-56334200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:56331000-56336200	Enhancers	Fetal Intestine Small	intestine
16	chr15:56331400-56334400	Enhancers	NHLF	lung
17	chr15:56331400-56335800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:56331400-56337800	Enhancers	HMEC	breast
19	chr15:56331600-56334000	Weak transcription	Primary T cells from cord blood	blood
20	chr15:56331600-56335400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:56332000-56334200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:56332200-56336400	Enhancers	Placenta	Placenta
23	chr15:56332400-56334800	Enhancers	HepG2	liver
24	chr15:56332800-56335800	Enhancers	NHEK	skin
25	chr15:56333000-56335000	Weak transcription	Brain Anterior Caudate	brain
26	chr15:56333200-56335600	Enhancers	A549	lung
27	chr15:56333400-56334400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:56333400-56334600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:56333400-56334600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:56333400-56334600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:56333400-56334600	Enhancers	Hela-S3	cervix
32	chr15:56333400-56334800	Weak transcription	HUVEC	blood vessel
33	chr15:56333400-56334800	Weak transcription	K562	blood
34	chr15:56333400-56335000	Weak transcription	Osteobl	bone
35	chr15:56333400-56335200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr15:56333400-56335200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:56333400-56335400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:56333400-56335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:56333400-56335800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:56333400-56336000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:56333400-56336000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:56333400-56337200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr15:56333400-56342200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:56333600-56334000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:56333600-56334800	Weak transcription	Left Ventricle	heart

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