Variant report

Variant	rs146174352
Chromosome Location	chr9:100756984-100756985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100755345..100757563-chr9:100771597..100774410,2	MCF-7	breast:
2	chr9:100717654..100720111-chr9:100754691..100757274,2	K562	blood:
3	chr9:100756332..100760444-chr9:100817600..100819282,3	MCF-7	breast:
4	chr9:100754831..100757126-chr9:100775757..100778631,2	MCF-7	breast:
5	chr9:100756765..100758556-chr9:100774591..100777214,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335186	chr9:100756939-100760935	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100748000-100760400	Weak transcription	Fetal Kidney	kidney
2	chr9:100748000-100760800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:100748000-100767200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:100748400-100761600	Weak transcription	Brain Anterior Caudate	brain
5	chr9:100748600-100757600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:100749000-100757800	Weak transcription	Fetal Stomach	stomach
7	chr9:100749200-100767200	Weak transcription	Esophagus	oesophagus
8	chr9:100750000-100767200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:100750000-100767400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:100750400-100757400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:100750600-100757200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:100750800-100757000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:100750800-100764000	Weak transcription	Fetal Brain Female	brain
14	chr9:100751000-100761800	Weak transcription	Right Atrium	heart
15	chr9:100751000-100764200	Weak transcription	Fetal Brain Male	brain
16	chr9:100751000-100765200	Weak transcription	Aorta	Aorta
17	chr9:100751400-100757600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:100751800-100757600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr9:100752000-100784000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:100752800-100757000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:100752800-100757000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:100752800-100757000	Weak transcription	Placenta	Placenta
23	chr9:100752800-100757200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:100752800-100757600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:100752800-100757800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:100752800-100759600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr9:100753000-100757000	Weak transcription	HUVEC	blood vessel
28	chr9:100753000-100757200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr9:100753000-100761600	Weak transcription	HSMMtube	muscle
30	chr9:100753000-100767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr9:100753000-100768400	Weak transcription	Fetal Heart	heart
32	chr9:100753000-100769000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:100753200-100757000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr9:100753200-100757000	Weak transcription	HSMM	muscle
35	chr9:100753200-100757200	Weak transcription	NHDF-Ad	bronchial
36	chr9:100753400-100767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr9:100753600-100757000	Weak transcription	Left Ventricle	heart
38	chr9:100753600-100767200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:100753800-100757000	Weak transcription	NH-A	brain
40	chr9:100754000-100757200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr9:100754400-100758000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:100754600-100757000	Enhancers	Fetal Intestine Small	intestine
43	chr9:100754600-100757200	Enhancers	Fetal Intestine Large	intestine
44	chr9:100754600-100784200	Strong transcription	Dnd41	blood
45	chr9:100754600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:100754800-100757200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr9:100755000-100757000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:100755000-100757200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:100755200-100759200	Weak transcription	NHLF	lung
50	chr9:100755200-100782200	Strong transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links