Variant report

Variant	rs1461815
Chromosome Location	chr3:28812007-28812008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1947704	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2306079	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2306080	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2306082	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55859567	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60536736	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73066922	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73068807	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv876651	chr3:28774258-28823156	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv590012	chr3:28808844-28817784	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	nsv965406	chr3:28808867-28817686	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
7	esv16162	chr3:28810031-28817818	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
8	nsv441815	chr3:28810437-28816108	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv2763773	chr3:28810441-28816843	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
10	esv3495266	chr3:28811117-28815170	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	esv3495267	chr3:28811117-28815170	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
12	nsv516014	chr3:28811329-28814917	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
13	nsv590013	chr3:28811329-28816082	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
14	nsv590014	chr3:28811329-28816882	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
15	nsv590015	chr3:28811329-28817281	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
16	nsv590016	chr3:28811329-28817784	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
17	nsv590017	chr3:28811329-28819123	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
18	nsv876652	chr3:28811329-28947691	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28798400-28812200	Weak transcription	Aorta	Aorta
2	chr3:28811800-28812200	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links