Variant report

Variant	rs1461957
Chromosome Location	chr1:225965832-225965833
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:225965395..225967471-chr12:117490550..117492773,2	MCF-7	breast:
2	chr1:225963814..225970754-chr1:225996230..226002908,14	MCF-7	breast:
3	chr1:225965547..225966344-chr11:65624172..65624925,2	Hela-S3	cervix:
4	chr1:28832123..28832938-chr1:225965487..225966037,2	Hela-S3	cervix:
5	chr1:225965483..225966004-chr15:67813277..67813999,2	Hela-S3	cervix:
6	chr1:225965438..225966023-chr5:148650836..148651793,2	Hela-S3	cervix:
7	chr1:225837738..225841787-chr1:225965241..225967265,3	MCF-7	breast:
8	chr1:225964211..225968767-chr1:226248453..226252378,4	K562	blood:
9	chr1:225964614..225966521-chr1:226248789..226250672,2	K562	blood:
10	chr1:225839340..225843768-chr1:225964006..225968066,9	MCF-7	breast:
11	chr1:225652849..225654996-chr1:225964946..225967311,2	MCF-7	breast:
12	chr1:225963541..225967644-chr1:226069236..226073918,5	MCF-7	breast:
13	chr1:225963873..225967033-chr1:226031330..226035962,4	MCF-7	breast:
14	chr1:225964871..225966516-chr1:226110750..226112942,2	MCF-7	breast:
15	chr1:225964533..225968744-chr1:226068261..226071590,3	MCF-7	breast:
16	chr1:225686982..225689320-chr1:225964805..225966549,2	MCF-7	breast:
17	chr1:225964273..225967291-chr1:226184778..226188048,4	K562	blood:
18	chr1:225963673..225968224-chr1:226032543..226034938,4	MCF-7	breast:
19	chr1:225965401..225967311-chr1:226185341..226187298,3	MCF-7	breast:
20	chr1:225965429..225965968-chr17:74705524..74706086,2	NB4	blood:
21	chr1:225963904..225970275-chr1:225994893..226001084,15	K562	blood:
22	chr1:225962862..225967352-chr1:225996084..226002774,11	MCF-7	breast:
23	chr1:225698646..225701113-chr1:225965307..225966901,2	MCF-7	breast:
24	chr1:225964257..225969087-chr1:226030786..226035881,7	K562	blood:
25	chr1:225965472..225966023-chr15:72978001..72978969,2	Hela-S3	cervix:
26	chr1:225965000..225971731-chr1:226051573..226055609,6	K562	blood:
27	chr1:225962294..225967531-chr1:225994011..226002080,11	K562	blood:
28	chr1:225965466..225966431-chr12:49658590..49659116,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000140463	Chromatin interaction
ENSG00000157510	Chromatin interaction
ENSG00000242125	Chromatin interaction
ENSG00000167553	Chromatin interaction
ENSG00000182534	Chromatin interaction
ENSG00000154380	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000259673	Chromatin interaction
ENSG00000196187	Chromatin interaction
ENSG00000143751	Chromatin interaction
ENSG00000234476	Chromatin interaction
ENSG00000143811	Chromatin interaction
ENSG00000189227	Chromatin interaction
ENSG00000163041	Chromatin interaction
ENSG00000088992	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000175202	Chromatin interaction
ENSG00000242861	Chromatin interaction
ENSG00000143819	Chromatin interaction
ENSG00000180198	Chromatin interaction
ENSG00000272562	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16845221	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1795046	chr1:225874059-226091150	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv1834932	chr1:225874059-226091150	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225964400-225966400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:225964400-225966600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:225964400-225966800	Active TSS	NHDF-Ad	bronchial
4	chr1:225964600-225966200	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr1:225964600-225966400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr1:225964600-225966600	Active TSS	Brain Hippocampus Middle	brain
7	chr1:225964600-225966800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr1:225964600-225967000	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr1:225964600-225967000	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr1:225964600-225967000	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr1:225964600-225967000	Active TSS	Right Ventricle	heart
12	chr1:225964600-225967200	Active TSS	H9 Cell Line	embryonic stem cell
13	chr1:225964600-225967400	Active TSS	A549	lung
14	chr1:225964800-225966000	Bivalent/Poised TSS	HepG2	liver
15	chr1:225964800-225966200	Active TSS	Brain Substantia Nigra	brain
16	chr1:225964800-225966200	Active TSS	Colonic Mucosa	Colon
17	chr1:225964800-225966200	Active TSS	Esophagus	oesophagus
18	chr1:225964800-225966200	Active TSS	Lung	lung
19	chr1:225964800-225966800	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr1:225964800-225966800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:225964800-225966800	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr1:225964800-225967000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:225964800-225967000	Active TSS	Aorta	Aorta
24	chr1:225964800-225967000	Active TSS	Left Ventricle	heart
25	chr1:225964800-225967000	Active TSS	HSMMtube	muscle
26	chr1:225964800-225967200	Active TSS	H1 Cell Line	embryonic stem cell
27	chr1:225964800-225967200	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr1:225964800-225967200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:225964800-225967200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:225964800-225967200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:225964800-225967200	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr1:225964800-225967200	Active TSS	Fetal Kidney	kidney
33	chr1:225964800-225967200	Active TSS	Ovary	ovary
34	chr1:225965000-225966200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr1:225965000-225966200	Active TSS	Gastric	stomach
36	chr1:225965000-225966400	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr1:225965000-225966400	Active TSS	Rectal Smooth Muscle	rectum
38	chr1:225965000-225966600	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr1:225965000-225966600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr1:225965000-225966600	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr1:225965000-225966600	Active TSS	Fetal Brain Female	brain
42	chr1:225965000-225966600	Active TSS	Placenta Amnion	Placenta Amnion
43	chr1:225965000-225966800	Active TSS	Psoas Muscle	Psoas
44	chr1:225965000-225967000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr1:225965000-225967000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:225965000-225967000	Active TSS	Fetal Intestine Large	intestine
47	chr1:225965000-225967000	Active TSS	Fetal Intestine Small	intestine
48	chr1:225965000-225967200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr1:225965000-225967400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr1:225965000-225967600	Active TSS	GM12878-XiMat	blood

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