Variant report

Variant	rs1463436
Chromosome Location	chr16:70639114-70639115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11075773	0.96[ASN][1000 genomes]
rs12149517	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12930129	0.84[ASN][1000 genomes]
rs1965253	0.99[ASN][1000 genomes]
rs2303791	0.85[CEU][hapmap]
rs4985533	0.85[CEU][hapmap]
rs4985534	0.85[CEU][hapmap]
rs6499328	0.82[CHB][hapmap]
rs7190039	0.85[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1463436	LOC440348	Cis_chr	lymphoblastoid	RTeQTL
rs1463436	LOC440348	cis	multi-tissue	Pritchard

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70626200-70644200	Weak transcription	Right Atrium	heart
2	chr16:70626400-70642200	Weak transcription	Esophagus	oesophagus
3	chr16:70626400-70644200	Weak transcription	Lung	lung
4	chr16:70626400-70644200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr16:70629600-70644000	Weak transcription	Fetal Muscle Leg	muscle
6	chr16:70633200-70640600	Weak transcription	Fetal Stomach	stomach
7	chr16:70636000-70640600	Strong transcription	Fetal Intestine Small	intestine
8	chr16:70636400-70644200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr16:70637400-70639200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr16:70637800-70639200	Enhancers	Brain Hippocampus Middle	brain
11	chr16:70637800-70639400	Enhancers	Brain Substantia Nigra	brain
12	chr16:70638600-70639200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr16:70638600-70639200	Enhancers	Fetal Muscle Trunk	muscle
14	chr16:70638600-70639400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr16:70638800-70639200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:70638800-70639200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr16:70639000-70639200	Enhancers	Spleen	Spleen
18	chr16:70639000-70639800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr16:70639000-70642000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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