Variant report

Variant	rs1463583
Chromosome Location	chr12:26433912-26433913
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26433066..26435968-chr12:26443179..26446134,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11048441	0.94[ASN][1000 genomes]
rs1355734	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs1480031	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480040	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs1533249	1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs1913234	0.94[ASN][1000 genomes]
rs2343875	0.94[ASN][1000 genomes]
rs6487545	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7295825	0.94[ASN][1000 genomes]
rs753616	1.00[TSI][hapmap]
rs7956017	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs7963516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7976541	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26421800-26435800	Weak transcription	Gastric	stomach
2	chr12:26424800-26447000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr12:26428400-26434000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:26429000-26434000	Weak transcription	Ovary	ovary
5	chr12:26429000-26435400	Weak transcription	GM12878-XiMat	blood
6	chr12:26429000-26440600	Weak transcription	Right Atrium	heart
7	chr12:26429200-26434000	Weak transcription	Brain Anterior Caudate	brain
8	chr12:26429200-26434000	Weak transcription	Lung	lung
9	chr12:26429200-26434200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:26429200-26434200	Weak transcription	Adipose Nuclei	Adipose
11	chr12:26430000-26437400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:26430200-26438400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:26431200-26434000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:26431400-26434000	Weak transcription	NHDF-Ad	bronchial
15	chr12:26431600-26434200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:26431600-26434200	Weak transcription	HSMMtube	muscle
17	chr12:26431800-26435600	Weak transcription	Fetal Thymus	thymus
18	chr12:26431800-26436200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:26432200-26434000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr12:26432400-26438200	Weak transcription	Brain Hippocampus Middle	brain
21	chr12:26432600-26434600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:26433000-26440600	Weak transcription	Spleen	Spleen
23	chr12:26433200-26434200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr12:26433600-26440600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr12:26433800-26434200	Enhancers	Brain Substantia Nigra	brain
26	chr12:26433800-26434600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr12:26433800-26434600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr12:26433800-26434600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr12:26433800-26434800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:26433800-26435000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:26433800-26435000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr12:26433800-26435400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr12:26433800-26435600	Enhancers	Cortex derived primary cultured neurospheres	brain

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