Variant report

Variant	rs1463789
Chromosome Location	chr13:97999735-97999736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97992598..97996850-chr13:97999522..98001186,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1463791	0.82[ASN][1000 genomes]
rs1553012	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17235649	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60635002	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61972768	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61972769	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9556701	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97982000-98002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr13:97984000-98000800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr13:97986200-98003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:97991400-98002600	Weak transcription	Fetal Brain Female	brain
7	chr13:97991600-98020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr13:97991800-98001000	Weak transcription	Fetal Brain Male	brain
9	chr13:97992000-98006200	Weak transcription	Psoas Muscle	Psoas
10	chr13:97992800-98001000	Weak transcription	HSMM	muscle
11	chr13:97992800-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr13:97993200-97999800	Weak transcription	Fetal Kidney	kidney
13	chr13:97994200-98016200	Weak transcription	NHDF-Ad	bronchial
14	chr13:97995000-98007400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr13:97995200-98007400	Strong transcription	Primary T cells from cord blood	blood
16	chr13:97995200-98007800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr13:97995200-98011000	Strong transcription	Placenta	Placenta
18	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
19	chr13:97995600-98005600	Strong transcription	Hela-S3	cervix
20	chr13:97996000-97999800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:97996200-98019400	Weak transcription	GM12878-XiMat	blood
22	chr13:97996400-98003000	Weak transcription	Brain Germinal Matrix	brain
23	chr13:97996800-98003600	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:97997200-98002000	Weak transcription	Fetal Heart	heart
25	chr13:97997400-98000400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr13:97997400-98001800	Weak transcription	Colon Smooth Muscle	Colon
27	chr13:97997400-98002000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:97997400-98002800	Strong transcription	Fetal Lung	lung
29	chr13:97997400-98006400	Weak transcription	HMEC	breast
30	chr13:97997400-98007800	Strong transcription	Adipose Nuclei	Adipose
31	chr13:97997400-98011600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr13:97997400-98019000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr13:97997600-98008400	Weak transcription	K562	blood
34	chr13:97998200-98002600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr13:97998200-98003600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr13:97998400-98001000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr13:97998400-98003200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr13:97998400-98007400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr13:97998400-98015800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:97998600-98000200	Genic enhancers	Brain Cingulate Gyrus	brain
41	chr13:97998600-98001600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr13:97998600-98002600	Strong transcription	HepG2	liver
43	chr13:97998600-98002800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr13:97998600-98004600	Strong transcription	Brain Anterior Caudate	brain
45	chr13:97998600-98005000	Strong transcription	HUVEC	blood vessel
46	chr13:97998600-98006600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr13:97998600-98006600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr13:97998600-98007400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr13:97998600-98007600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:97998800-97999800	Weak transcription	Primary B cells from cord blood	blood

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