Variant report

Variant	rs146399654
Chromosome Location	chr1:186970796-186970797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv492108	chr1:186969793-187745761	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186953200-186970800	Weak transcription	Adipose Nuclei	Adipose
2	chr1:186969000-186975400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:186969800-186971400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:186969800-186971600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:186969800-186971600	Enhancers	NHDF-Ad	bronchial
6	chr1:186970000-186971200	Enhancers	Osteobl	bone
7	chr1:186970000-186971600	Enhancers	NH-A	brain
8	chr1:186970000-186971800	Enhancers	Hela-S3	cervix
9	chr1:186970200-186970800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:186970200-186971000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:186970200-186971200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:186970200-186971400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:186970200-186971600	Enhancers	HMEC	breast
14	chr1:186970400-186970800	Flanking Active TSS	NHEK	skin
15	chr1:186970400-186971200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr1:186970400-186971400	Enhancers	NHLF	lung
17	chr1:186970400-186971600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:186970600-186970800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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