Variant report

Variant	rs146406299
Chromosome Location	chr15:74045989-74045990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr15:74044597-74046256	IMR90	lung:	n/a	chr15:74044619-74044629 chr15:74044615-74044625

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf59-2	chr15:74045697-74046276	NONHSAT047155

Variant related genes	Relation type
C15orf59	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3421437	chr15:74043924-74046872	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv9813	chr15:74044169-74048692	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv13877	chr15:74044459-74046147	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3418540	chr15:74044749-74046697	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74043200-74046000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:74043600-74046000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr15:74043800-74046000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:74044000-74046000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr15:74044000-74046000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr15:74044000-74046000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:74044000-74046000	Active TSS	Brain Germinal Matrix	brain
8	chr15:74044000-74046000	Active TSS	Fetal Brain Female	brain
9	chr15:74044200-74046000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
10	chr15:74044200-74046000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74044200-74046000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:74044200-74046000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr15:74044200-74046000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:74044400-74046000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:74044400-74046000	Active TSS	Ovary	ovary
16	chr15:74044400-74046000	Active TSS	Psoas Muscle	Psoas
17	chr15:74044600-74046000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
18	chr15:74044800-74046000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:74044800-74046000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
20	chr15:74044800-74046200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr15:74045000-74046200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:74045200-74046600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
23	chr15:74045400-74046000	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr15:74045400-74046000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr15:74045600-74046000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:74045600-74046000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:74045600-74046000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:74045600-74046000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:74045600-74046000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:74045600-74046000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
31	chr15:74045600-74046000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
32	chr15:74045600-74046000	Flanking Active TSS	Right Ventricle	heart
33	chr15:74045600-74046200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:74045600-74046200	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr15:74045600-74046400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:74045600-74046400	Enhancers	Brain Cingulate Gyrus	brain
37	chr15:74045800-74046000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:74045800-74046000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:74045800-74046000	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:74045800-74046000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:74045800-74046000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
42	chr15:74045800-74046000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:74045800-74046000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:74045800-74046000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:74045800-74046000	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr15:74045800-74046000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:74045800-74046000	Bivalent Enhancer	Colonic Mucosa	Colon
48	chr15:74045800-74046000	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr15:74045800-74046000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
50	chr15:74045800-74046000	Flanking Active TSS	Esophagus	oesophagus

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