Variant report

Variant	rs146436683
Chromosome Location	chr12:118665075-118665076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053785	chr12:118490955-118874194	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1035497	chr12:118599539-118732144	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541612	chr12:118599539-118732144	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv524938	chr12:118624736-118740675	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1038224	chr12:118648415-118791388	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1040061	chr12:118648415-118800437	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3448588	chr12:118664219-118666267	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv1815572	chr12:118664823-118685792	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118621000-118682600	Weak transcription	A549	lung
2	chr12:118628400-118697200	Weak transcription	Psoas Muscle	Psoas
3	chr12:118628800-118672600	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:118628800-118673000	Weak transcription	NH-A	brain
5	chr12:118636800-118695000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:118637200-118700600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr12:118637200-118700800	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:118637400-118671400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:118637400-118672400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr12:118637400-118684200	Weak transcription	Pancreas	Pancrea
11	chr12:118637400-118694200	Weak transcription	Brain Angular Gyrus	brain
12	chr12:118637400-118701400	Weak transcription	Spleen	Spleen
13	chr12:118637400-118703800	Weak transcription	Esophagus	oesophagus
14	chr12:118637400-118724000	Weak transcription	Aorta	Aorta
15	chr12:118637600-118673000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr12:118638800-118687800	Weak transcription	Gastric	stomach
17	chr12:118639000-118672200	Weak transcription	Placenta	Placenta
18	chr12:118639000-118672200	Weak transcription	Left Ventricle	heart
19	chr12:118639000-118672800	Weak transcription	Small Intestine	intestine
20	chr12:118639400-118674800	Weak transcription	HMEC	breast
21	chr12:118639800-118672600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr12:118643000-118672200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr12:118644200-118665600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr12:118644800-118666400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr12:118647800-118666400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:118648000-118666400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:118649800-118666600	Weak transcription	Thymus	Thymus
28	chr12:118650400-118690400	Weak transcription	Stomach Mucosa	stomach
29	chr12:118650600-118671400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr12:118650600-118672400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr12:118650600-118679400	Weak transcription	HUVEC	blood vessel
32	chr12:118650800-118672200	Weak transcription	HSMM	muscle
33	chr12:118651800-118672200	Weak transcription	Lung	lung
34	chr12:118651800-118672400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr12:118652000-118666400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:118652000-118666400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr12:118652000-118666600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr12:118652000-118672200	Weak transcription	Fetal Thymus	thymus
39	chr12:118652000-118672600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr12:118652000-118673000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:118652200-118666400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr12:118652200-118666400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr12:118652200-118666600	Weak transcription	Fetal Lung	lung
44	chr12:118652200-118666600	Weak transcription	Osteobl	bone
45	chr12:118652200-118672600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr12:118652200-118727800	Weak transcription	NHLF	lung
47	chr12:118652400-118666400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr12:118654000-118674000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr12:118657600-118666600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr12:118658000-118666800	Weak transcription	Fetal Intestine Small	intestine

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