Variant report

Variant	rs146449589
Chromosome Location	chr21:37923669-37923670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37800788..37802502-chr21:37923063..37924885,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv13917	chr21:37922877-37938746	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37915800-37924800	Weak transcription	Right Atrium	heart
2	chr21:37920200-37923800	Weak transcription	Ovary	ovary
3	chr21:37921800-37923800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr21:37921800-37924000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr21:37922000-37928800	Enhancers	Fetal Muscle Leg	muscle
6	chr21:37922800-37923800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr21:37922800-37923800	Enhancers	HSMMtube	muscle
8	chr21:37922800-37923800	Enhancers	NHDF-Ad	bronchial
9	chr21:37922800-37924000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr21:37922800-37924200	Enhancers	Liver	Liver
11	chr21:37922800-37924800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr21:37922800-37924800	Enhancers	NHLF	lung
13	chr21:37923000-37923800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr21:37923000-37924000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr21:37923000-37924000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr21:37923000-37924200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr21:37923000-37924600	Enhancers	HSMM	muscle
18	chr21:37923000-37924800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr21:37923200-37924200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr21:37923200-37924200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
21	chr21:37923200-37924600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr21:37923200-37924600	Enhancers	Fetal Kidney	kidney
23	chr21:37923200-37924800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr21:37923400-37924000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr21:37923400-37924400	Enhancers	Fetal Lung	lung
26	chr21:37923400-37924800	Enhancers	Osteobl	bone
27	chr21:37923600-37923800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr21:37923600-37924200	Bivalent Enhancer	Adipose Nuclei	Adipose
29	chr21:37923600-37924400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr21:37923600-37924400	Enhancers	NH-A	brain
31	chr21:37923600-37924600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr21:37923600-37924800	Enhancers	Monocytes-CD14+_RO01746	blood

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