Variant report

Variant	rs1464600
Chromosome Location	chr3:119526695-119526696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1464601	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2461816	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2461824	0.95[ASN][1000 genomes]
rs2472680	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3732356	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119514400-119526800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:119515400-119527200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:119515400-119528600	Weak transcription	Colonic Mucosa	Colon
4	chr3:119515800-119527400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:119516800-119534600	Weak transcription	HepG2	liver
6	chr3:119525000-119528200	Strong transcription	Fetal Intestine Large	intestine
7	chr3:119525000-119532400	Weak transcription	Small Intestine	intestine
8	chr3:119525200-119528600	Strong transcription	Fetal Intestine Small	intestine
9	chr3:119525200-119529000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:119525800-119528800	Strong transcription	Liver	Liver
11	chr3:119526000-119527800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr3:119526000-119528000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr3:119526600-119528400	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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