Variant report

Variant	rs146466230
Chromosome Location	chr7:128074194-128074195
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr7:128074043-128075993	A549	lung:	n/a	chr7:128075361-128075369
2	REST	chr7:128074123-128075868	A549	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:128047282..128051646-chr7:128071407..128074955,4	MCF-7	breast:
2	chr7:128066083..128070069-chr7:128074107..128077404,7	MCF-7	breast:
3	chr7:128073893..128075485-chr7:128078567..128080438,2	K562	blood:
4	chr7:128066135..128077193-chr7:128094256..128102719,54	MCF-7	breast:
5	chr7:128045089..128046759-chr7:128073857..128075497,2	MCF-7	breast:
6	chr7:128071934..128079559-chr7:128081793..128086197,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000228700	TF binding region
ENSG00000238590	Chromatin interaction
ENSG00000273184	Chromatin interaction
ENSG00000135245	Chromatin interaction
ENSG00000106348	Chromatin interaction
ENSG00000240758	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv1801356	chr7:128073366-128084133	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128051400-128086200	Weak transcription	Right Atrium	heart
2	chr7:128070200-128074800	Enhancers	Placenta	Placenta
3	chr7:128071200-128074800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:128071800-128074400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:128071800-128078600	Weak transcription	Adipose Nuclei	Adipose
6	chr7:128072200-128074600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:128072200-128075000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:128072400-128075400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:128072600-128074800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:128072600-128075000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:128072600-128075400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:128072600-128076200	Enhancers	HepG2	liver
13	chr7:128072800-128075000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:128072800-128075000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:128073000-128075000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:128073000-128075000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:128073200-128074800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:128073600-128074600	Flanking Active TSS	A549	lung
19	chr7:128073800-128083800	Weak transcription	Esophagus	oesophagus
20	chr7:128074000-128075000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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