Variant report

Variant	rs146513827
Chromosome Location	chr21:14360413-14360414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586984	chr21:14338286-14432856	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1809537	chr21:14338286-14497151	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv11295	chr21:14338455-14368624	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv3335863	chr21:14342797-14360444	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3336537	chr21:14346546-14365605	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	esv3427829	chr21:14347818-14366030	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv834042	chr21:14348575-14492189	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv9592	chr21:14348827-14365535	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
9	esv6158	chr21:14349882-14362028	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases
10	esv3364842	chr21:14350017-14366017	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
11	esv3357803	chr21:14350051-14362078	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	lncRNA	n/a	inside rSNPs	diseases
12	esv3354047	chr21:14350456-14366629	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
13	esv3383833	chr21:14360347-14360628	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:14338200-14363600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr21:14354600-14369200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr21:14357600-14368800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr21:14358200-14361200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr21:14358600-14362800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr21:14358800-14368800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr21:14359800-14363000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr21:14360400-14360800	ZNF genes & repeats	NH-A	brain
9	chr21:14360400-14361000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links