Variant report

Variant	rs146540928
Chromosome Location	chr9:22005941-22005942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22005608..22009530-chr9:22211237..22215024,4	MCF-7	breast:
2	chr9:22003003..22006002-chr9:22110995..22113643,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236921	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1821117	chr9:21933029-22012229	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1018514	chr9:21944275-22075326	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv892746	chr9:21953137-22028801	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	esv3492902	chr9:21971026-22006145	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	esv3492901	chr9:21971095-22006263	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv892747	chr9:21984661-22068646	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv892748	chr9:22005647-22011642	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21995800-22008400	Weak transcription	Aorta	Aorta
2	chr9:21996400-22007800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:22003800-22006800	Transcr. at gene 5' and 3'	NH-A	brain
4	chr9:22004200-22006400	Bivalent Enhancer	Primary B cells from cord blood	blood
5	chr9:22004400-22006000	Strong transcription	Muscle Satellite Cultured Cells	--
6	chr9:22004800-22006400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
7	chr9:22004800-22006600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:22005000-22006000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:22005000-22006000	ZNF genes & repeats	Esophagus	oesophagus
10	chr9:22005000-22006200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
11	chr9:22005000-22006200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:22005000-22006400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr9:22005000-22006400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr9:22005000-22006400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr9:22005000-22006400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr9:22005000-22006400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:22005000-22006400	Transcr. at gene 5' and 3'	HSMMtube	muscle
18	chr9:22005000-22006600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
19	chr9:22005000-22006600	Transcr. at gene 5' and 3'	Hela-S3	cervix
20	chr9:22005000-22008400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr9:22005200-22006000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:22005200-22006000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:22005200-22006000	Genic enhancers	HMEC	breast
24	chr9:22005200-22006000	Strong transcription	Osteobl	bone
25	chr9:22005200-22006200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:22005200-22006400	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:22005200-22006400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:22005200-22006400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:22005200-22006400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:22005200-22006400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
31	chr9:22005200-22006400	Enhancers	Pancreas	Pancrea
32	chr9:22005200-22006400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
33	chr9:22005200-22006400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
34	chr9:22005200-22006400	Bivalent Enhancer	Spleen	Spleen
35	chr9:22005200-22006400	Transcr. at gene 5' and 3'	NHLF	lung
36	chr9:22005200-22006600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr9:22005200-22006800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
38	chr9:22005400-22006000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr9:22005400-22006000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
40	chr9:22005400-22006000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr9:22005400-22006000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
42	chr9:22005400-22006200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
43	chr9:22005400-22006200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:22005400-22006200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:22005400-22006400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:22005400-22006400	Transcr. at gene 5' and 3'	Dnd41	blood
47	chr9:22005400-22006600	Flanking Active TSS	NHEK	skin
48	chr9:22005400-22006800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:22005400-22006800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:22005400-22007200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links