Variant report

Variant	rs146544444
Chromosome Location	chr4:103712771-103712772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103711113..103714481-chr4:103747223..103749137,4	MCF-7	breast:
2	chr4:103681921..103683833-chr4:103711504..103713262,2	MCF-7	breast:
3	chr4:103700009..103702220-chr4:103711139..103712896,2	K562	blood:
4	chr4:103711798..103714550-chr4:103718145..103720751,3	K562	blood:
5	chr4:103711798..103714749-chr4:103718145..103719844,2	K562	blood:

Variant related genes	Relation type
ENSG00000109332	Chromatin interaction
ENSG00000109323	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526256	chr4:103712589-103728010	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103699400-103725000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:103700000-103714800	Weak transcription	Fetal Heart	heart
3	chr4:103700200-103716800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:103700400-103712800	Weak transcription	Primary B cells from cord blood	blood
5	chr4:103700400-103716200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:103700600-103716000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:103700600-103731600	Weak transcription	Pancreas	Pancrea
8	chr4:103701000-103714800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:103701400-103718000	Weak transcription	Lung	lung
10	chr4:103702200-103712800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:103702200-103714000	Weak transcription	HMEC	breast
12	chr4:103702200-103716200	Weak transcription	NHEK	skin
13	chr4:103702200-103719000	Weak transcription	Small Intestine	intestine
14	chr4:103702800-103717000	Weak transcription	Fetal Brain Male	brain
15	chr4:103703400-103714800	Weak transcription	HepG2	liver
16	chr4:103704800-103716000	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:103706400-103716200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:103706400-103719000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:103707800-103716000	Weak transcription	Psoas Muscle	Psoas
20	chr4:103707800-103724800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:103707800-103732200	Weak transcription	Right Ventricle	heart
22	chr4:103709400-103713400	Weak transcription	NHLF	lung
23	chr4:103710200-103712800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:103710400-103718800	Weak transcription	Thymus	Thymus
25	chr4:103710600-103712800	Weak transcription	Brain Angular Gyrus	brain
26	chr4:103710600-103715000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr4:103710600-103717000	Weak transcription	Hela-S3	cervix
28	chr4:103710800-103719600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:103711000-103716000	Weak transcription	Placenta	Placenta
30	chr4:103711000-103716800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:103711000-103717800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:103711200-103713600	Weak transcription	Primary T cells from cord blood	blood
33	chr4:103711200-103716200	Weak transcription	Brain Anterior Caudate	brain
34	chr4:103711200-103716200	Weak transcription	Fetal Lung	lung
35	chr4:103711200-103717000	Weak transcription	Fetal Kidney	kidney
36	chr4:103711200-103724800	Weak transcription	Fetal Stomach	stomach
37	chr4:103711200-103731000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:103711200-103731600	Weak transcription	Spleen	Spleen
39	chr4:103711400-103712800	Weak transcription	NH-A	brain
40	chr4:103711400-103713600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:103711400-103714600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr4:103711400-103714800	Weak transcription	HUVEC	blood vessel
43	chr4:103711400-103715800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr4:103711400-103716000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr4:103711400-103716000	Weak transcription	Brain Substantia Nigra	brain
46	chr4:103711400-103732600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr4:103711600-103712800	Weak transcription	Osteobl	bone
48	chr4:103711600-103714800	Weak transcription	Dnd41	blood
49	chr4:103711600-103719000	Weak transcription	Brain Germinal Matrix	brain
50	chr4:103711800-103713800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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