Variant report

Variant	rs146572469
Chromosome Location	chr1:209959320-209959321
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr1:209958985-209960088	PBDE	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:209955222..209959394-chr1:210545816..210547914,4	K562	blood:
2	chr1:209955520..209962214-chr1:209976009..209982555,8	K562	blood:
3	chr1:209957348..209959526-chr1:209965730..209967837,2	K562	blood:
4	chr1:209950429..209953463-chr1:209956092..209959569,7	K562	blood:
5	chr1:209957965..209959806-chr1:209959959..209962744,2	K562	blood:
6	chr1:209954505..209956563-chr1:209958183..209960148,2	K562	blood:
7	chr1:209957266..209960368-chr1:209964452..209967778,3	MCF-7	breast:
8	chr1:209955602..209959674-chr1:209962858..209967873,6	MCF-7	breast:
9	chr1:209956289..209959543-chr1:209978892..209981541,4	K562	blood:
10	chr1:209958606..209961246-chr1:209973550..209976119,2	MCF-7	breast:

No data

Variant related genes	Relation type
C1orf74	TF binding region
ENSG00000232222	Chromatin interaction
ENSG00000117595	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000009790	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1006632	chr1:209886202-209970355	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv4343	chr1:209929932-209974877	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1067914	chr1:209955818-209972979	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
7	nsv945273	chr1:209958252-209960036	Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209957800-209978600	Weak transcription	Spleen	Spleen
2	chr1:209958000-209960600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:209958000-209961000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:209958000-209961400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:209958000-209971600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:209958200-209962600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:209958200-209963800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:209958400-209959400	Genic enhancers	HMEC	breast
9	chr1:209958400-209960200	Weak transcription	Right Atrium	heart
10	chr1:209958400-209960600	Enhancers	Liver	Liver
11	chr1:209958400-209960800	Enhancers	Left Ventricle	heart
12	chr1:209958400-209961800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:209958400-209962200	Weak transcription	Esophagus	oesophagus
14	chr1:209958400-209962200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr1:209958400-209962400	Enhancers	Stomach Mucosa	stomach
16	chr1:209958400-209962800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:209958400-209968600	Weak transcription	Lung	lung
18	chr1:209958400-209971800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:209958400-209974000	Weak transcription	Aorta	Aorta
20	chr1:209958400-209978600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:209958600-209959400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:209958600-209959600	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:209958600-209959600	Strong transcription	Fetal Intestine Small	intestine
24	chr1:209958600-209959800	Weak transcription	Adipose Nuclei	Adipose
25	chr1:209958600-209959800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:209958600-209959800	Strong transcription	Fetal Intestine Large	intestine
27	chr1:209958600-209959800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:209958600-209960000	Genic enhancers	Duodenum Mucosa	Duodenum
29	chr1:209958600-209960200	Weak transcription	Gastric	stomach
30	chr1:209958600-209960200	Weak transcription	Pancreas	Pancrea
31	chr1:209958600-209960400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:209958600-209960400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:209958600-209960400	Weak transcription	Colonic Mucosa	Colon
34	chr1:209958600-209960400	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr1:209958600-209960400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr1:209958600-209960600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr1:209958600-209960800	Weak transcription	Placenta	Placenta
38	chr1:209958600-209961200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr1:209958600-209961400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:209958600-209961400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr1:209958600-209962400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr1:209958600-209963600	Weak transcription	HUVEC	blood vessel
43	chr1:209958600-209966200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:209958600-209966600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr1:209958600-209967000	Genic enhancers	NHEK	skin
46	chr1:209958600-209971200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:209958600-209972000	Weak transcription	Fetal Kidney	kidney
48	chr1:209958600-209978800	Weak transcription	Right Ventricle	heart
49	chr1:209958800-209960000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:209959000-209959400	Flanking Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links