Variant report

Variant	rs146574486
Chromosome Location	chr5:16728903-16728904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16723686..16725760-chr5:16727885..16730861,2	MCF-7	breast:
2	chr5:16727860..16733317-chr5:16734761..16739949,6	MCF-7	breast:
3	chr5:16728548..16730757-chr5:16733455..16736411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145555	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv880373	chr5:16710572-16785604	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv980549	chr5:16728420-16731008	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16682400-16736000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:16711200-16736400	Weak transcription	Hela-S3	cervix
3	chr5:16711400-16730200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:16711400-16731800	Weak transcription	HMEC	breast
5	chr5:16711600-16736000	Weak transcription	Placenta	Placenta
6	chr5:16713800-16731600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:16713800-16735600	Weak transcription	Colonic Mucosa	Colon
8	chr5:16714000-16730200	Weak transcription	Osteobl	bone
9	chr5:16714200-16730400	Weak transcription	NHLF	lung
10	chr5:16714200-16736000	Weak transcription	NHDF-Ad	bronchial
11	chr5:16714400-16730000	Weak transcription	NH-A	brain
12	chr5:16722200-16730200	Weak transcription	Stomach Mucosa	stomach
13	chr5:16722200-16734200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:16722400-16729800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:16722400-16730000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:16722400-16730000	Weak transcription	NHEK	skin
17	chr5:16722400-16730200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:16722400-16734000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:16722600-16736000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:16723400-16735600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:16724600-16734800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:16725800-16729000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:16725800-16729200	Enhancers	Brain Anterior Caudate	brain
24	chr5:16725800-16730000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:16726200-16729000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr5:16726200-16729000	Enhancers	HSMMtube	muscle
27	chr5:16726200-16729600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr5:16726400-16729000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr5:16726400-16729000	Enhancers	Brain Substantia Nigra	brain
30	chr5:16726600-16729000	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr5:16727000-16729000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:16727000-16731600	Weak transcription	Gastric	stomach
33	chr5:16727200-16730000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:16727400-16729000	Enhancers	Primary hematopoietic stem cells	blood
35	chr5:16727400-16729200	Enhancers	Duodenum Mucosa	Duodenum
36	chr5:16727600-16729000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr5:16727600-16729000	Enhancers	Fetal Muscle Leg	muscle
38	chr5:16727600-16729200	Enhancers	Fetal Brain Male	brain
39	chr5:16727600-16729400	Enhancers	HUVEC	blood vessel
40	chr5:16727600-16735400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr5:16727800-16729000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:16727800-16729000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:16727800-16729000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr5:16727800-16730200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr5:16728000-16729000	Enhancers	H9 Cell Line	embryonic stem cell
46	chr5:16728000-16729000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr5:16728000-16729000	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr5:16728000-16729000	Enhancers	Brain Angular Gyrus	brain
49	chr5:16728000-16729000	Enhancers	Fetal Muscle Trunk	muscle
50	chr5:16728000-16729000	Enhancers	Pancreas	Pancrea

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