Variant report

Variant	rs146577558
Chromosome Location	chr4:165898670-165898671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:165896605..165899172-chr4:165907116..165908745,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248229	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019150	chr4:165505585-165907924	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv880382	chr4:165793001-165964290	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	esv2757965	chr4:165801816-165976350	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	esv2759299	chr4:165801816-165976350	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv528686	chr4:165814359-165930168	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1015970	chr4:165852926-165973078	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv830140	chr4:165855999-165956612	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv967698	chr4:165898469-165911460	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165897600-165899000	Active TSS	GM12878-XiMat	blood
2	chr4:165897600-165899400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:165897600-165899400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:165897800-165898800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:165897800-165898800	Active TSS	Fetal Muscle Trunk	muscle
6	chr4:165897800-165899000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:165897800-165899200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr4:165897800-165899200	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:165897800-165899200	Active TSS	Right Ventricle	heart
10	chr4:165897800-165899200	Active TSS	HSMM	muscle
11	chr4:165897800-165899400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:165897800-165899400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:165897800-165899400	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr4:165897800-165899400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:165897800-165899400	Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr4:165897800-165899400	Active TSS	Fetal Stomach	stomach
17	chr4:165897800-165899400	Active TSS	Right Atrium	heart
18	chr4:165897800-165899600	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr4:165898000-165898800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr4:165898000-165898800	Active TSS	NH-A	brain
21	chr4:165898000-165899000	Active TSS	H1 Cell Line	embryonic stem cell
22	chr4:165898000-165899000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:165898000-165899000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:165898000-165899000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr4:165898000-165899000	Active TSS	Fetal Intestine Small	intestine
26	chr4:165898000-165899000	Active TSS	Fetal Lung	lung
27	chr4:165898000-165899000	Active TSS	NHLF	lung
28	chr4:165898000-165899200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:165898000-165899200	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr4:165898000-165899200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:165898000-165899200	Active TSS	Primary T cells from cord blood	blood
32	chr4:165898000-165899200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:165898000-165899200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr4:165898000-165899200	Active TSS	Colon Smooth Muscle	Colon
35	chr4:165898000-165899200	Active TSS	Duodenum Mucosa	Duodenum
36	chr4:165898000-165899200	Active TSS	Fetal Brain Female	brain
37	chr4:165898000-165899200	Active TSS	Left Ventricle	heart
38	chr4:165898000-165899200	Active TSS	Psoas Muscle	Psoas
39	chr4:165898000-165899400	Active TSS	Primary B cells from cord blood	blood
40	chr4:165898000-165899400	Active TSS	Brain Anterior Caudate	brain
41	chr4:165898000-165899400	Active TSS	Brain Hippocampus Middle	brain
42	chr4:165898000-165899400	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr4:165898000-165899400	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr4:165898000-165899400	Active TSS	Rectal Smooth Muscle	rectum
45	chr4:165898200-165898800	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr4:165898200-165898800	Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr4:165898200-165898800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:165898200-165898800	Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr4:165898200-165898800	Active TSS	Monocytes-CD14+_RO01746	blood
50	chr4:165898200-165899000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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